@article {49865,
	title = {Draft Genome Sequences from a Novel Clade of Bacillus cereus sensu lato Strains Isolated from the International Space Station},
	volume = {1},
	year = {2017},
	pages = {1},
	author = {Kasthuri Venkateswaran and Aleksandra Checinska-Sielaff and Joy Klubnik and Todd Treangen and M.J. Rosovitz and Nicholas H. Bergman}
}
@article {49864,
	title = {Identification and genomic analysis of a novel group C orthobunyavirus isolated from a mosquito captured near Iquitos, Peru},
	journal = {PLoS Negl Trop Dis},
	volume = {10},
	year = {2016},
	pages = {e0004440},
	author = {Todd Treangen and Schoeler, George and Phillippy, Adam M and Bergman, Nicholas H and Turell, Michael J}
}
@article {49863,
	title = {Complete genome sequence of the quality control strain Staphylococcus aureus subsp. aureus ATCC 25923},
	journal = {Genome announcements},
	volume = {2},
	year = {2014},
	pages = {e01110{\textendash}14},
	author = {Treangen, Todd J and Maybank, Rosslyn A and Enke, Sana and Friss, Mary Beth and Diviak, Lynn F and Karaolis, David KR and Koren, Sergey and Ondov, Brian and Phillippy, Adam M and Bergman, Nicholas H}
}
@article {49861,
	title = {The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes},
	journal = {Genome biology},
	volume = {15},
	year = {2014},
	pages = {524},
	author = {Todd Treangen and Ondov, Brian D and Koren, Sergey and Phillippy, Adam M}
}
@article {49862,
	title = {A new rhesus macaque assembly and annotation for next-generation sequencing analyses},
	journal = {Biology direct},
	volume = {9},
	year = {2014},
	pages = {20},
	author = {Zimin, Aleksey V and Cornish, Adam S and Maudhoo, Mnirnal D and Gibbs, Robert M and Zhang, Xiongfei and Pandey, Sanjit and Meehan, Daniel T and Wipfler, Kristin and Bosinger, Steven E and Johnson, Zachary P and Todd Treangen}
}
@article {49858,
	title = {Genome sequence of the attenuated Carbosap vaccine strain of Bacillus anthracis},
	journal = {Genome announcements},
	volume = {1},
	year = {2013},
	pages = {e00067{\textendash}12},
	author = {Harrington, Robin and Ondov, Brian D and Radune, Diana and Friss, Mary Beth and Klubnik, Joy and Diviak, Lynn and Hnath, Jonathan and Cendrowski, Stephen R and Blank, Thomas E and Karaolis, David and Todd Treangen}
}
@article {49859,
	title = {A framework for human microbiome research},
	journal = {Nature},
	volume = {486},
	year = {2012},
	pages = {215{\textendash}221},
	author = {Human Microbiome Project Consortium and Todd Treangen}
}
@article {49857,
	title = {Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone},
	journal = {Genome Biology},
	volume = {13},
	year = {2012},
	author = {Phillippy, Adam and Todd Treangen}
}
@article {49860,
	title = {Structure, function and diversity of the healthy human microbiome},
	journal = {Nature},
	volume = {486},
	year = {2012},
	pages = {207{\textendash}214},
	author = {Human Microbiome Project Consortium and Todd Treangen}
}
@article {49854,
	title = {Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths},
	journal = {Genome biology},
	volume = {12},
	year = {2011},
	pages = {R51},
	author = {Enk, Jacob and Devault, Alison and Debruyne, Regis and King, Christine E and Todd Treangen and O{\textquoteright}Rourke, Dennis and Salzberg, Steven L and Fisher, Daniel and MacPhee, Ross and Poinar, Hendrik}
}
@article {49850,
	title = {Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes},
	journal = {PLoS Genet},
	volume = {7},
	year = {2011},
	pages = {e1001284},
	author = {Todd Treangen and Eduardo Rocha}
}
@article {49855,
	title = {Repetitive DNA and next-generation sequencing: computational challenges and solutions},
	journal = {Nature Reviews Genetics},
	year = {2011},
	author = {Todd Treangen and Salzberg, Steven L}
}
@article {49848,
	title = {Genesis, effects and fates of repeats in prokaryotic genomes},
	journal = {FEMS microbiology reviews},
	volume = {33},
	year = {2009},
	pages = {539{\textendash}571},
	author = {Todd Treangen and Abraham, Anne-Laure and Touchon, Marie and Rocha, Eduardo PC}
}
@conference {49856,
	title = {Novel computational methods for large scale genome comparison},
	booktitle = {2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics (IWPACBB 2008)},
	year = {2009},
	publisher = {Springer},
	organization = {Springer},
	author = {Todd Treangen and Messeguer, Xavier}
}
@article {49869,
	title = {A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats},
	journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
	volume = {6},
	year = {2009},
	month = {Jan-04-2009},
	pages = {180 - 189},
	issn = {1545-5963},
	doi = {10.1109/TCBB.2009.9},
	url = {http://ieeexplore.ieee.org/document/4770094/http://xplorestaging.ieee.org/ielx5/8857/4907697/04770094.pdf?arnumber=4770094},
	author = {Todd Treangen and Darling, A.E. and Achaz, G. and Ragan, M.A. and Messeguer, X. and Rocha, E.P.C.}
}
@article {49853,
	title = {A novel heuristic for local multiple alignment of interspersed DNA repeats},
	journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)},
	volume = {6},
	year = {2009},
	pages = {180{\textendash}189},
	author = {Todd Treangen and Darling, Aaron E and Achaz, Guillaume and Ragan, Mark A and Messeguer, Xavier and Rocha, Eduardo PC}
}
@article {49849,
	title = {The impact of the neisserial DNA uptake sequences on genome evolution and stability},
	journal = {Genome biology},
	volume = {9},
	year = {2008},
	pages = {R60},
	author = {Todd Treangen and Ambur, Ole Herman and Tonjum, Tone and Rocha, Eduardo PC}
}
@book {49868,
	title = {Lecture Notes in Computer ScienceBioinformatics Research and ApplicationsGapped Extension for Local Multiple Alignment of Interspersed DNA Repeats},
	volume = {4983},
	year = {2008},
	pages = {74 - 86},
	publisher = {Springer Berlin Heidelberg},
	organization = {Springer Berlin Heidelberg},
	address = {Berlin, Heidelberg},
	isbn = {978-3-540-79449-3},
	doi = {10.1007/978-3-540-79450-910.1007/978-3-540-79450-9_8},
	url = {http://www.springerlink.com/index/10.1007/978-3-540-79450-9http://link.springer.com/10.1007/978-3-540-79450-9_8http://www.springerlink.com/index/pdf/10.1007/978-3-540-79450-9_8},
	author = {Todd Treangen and Darling, Aaron E. and Ragan, Mark A. and Messeguer, Xavier}
}
@article {49852,
	title = {Analyzing patterns of microbial evolution using the mauve genome alignment system},
	journal = {Comparative Genomics},
	year = {2007},
	pages = {135{\textendash}152},
	author = {Darling, Aaron E and Todd Treangen and Messeguer, Xavier and Perna, Nicole T}
}
@book {49866,
	title = {Methods in Molecular BiologyComparative GenomicsAnalyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System},
	volume = {396},
	year = {2007},
	pages = {135 - 152},
	publisher = {Humana Press},
	organization = {Humana Press},
	address = {Totowa, NJ},
	isbn = {978-1-934115-37-4},
	issn = {1064-3745},
	doi = {10.1007/978-1-59745-515-210.1007/978-1-59745-515-2_10},
	url = {http://www.springerlink.com/index/10.1007/978-1-59745-515-2http://www.springerlink.com/index/pdf/10.1007/978-1-59745-515-2http://link.springer.com/10.1007/978-1-59745-515-2_10http://www.springerlink.com/index/pdf/10.1007/978-1-59745-515-2_10},
	author = {Darling, Aaron E and Todd Treangen and Messeguer, Xavier and Perna, Nicole T},
	editor = {Walker, John M. and Bergman, Nicholas H.}
}
@article {49847,
	title = {M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species},
	journal = {BMC bioinformatics},
	volume = {7},
	year = {2006},
	pages = {433},
	author = {Todd Treangen and Messeguer, Xavier}
}
@conference {49851,
	title = {Procrastination leads to efficient filtration for local multiple alignment},
	booktitle = {International Workshop on Algorithms in Bioinformatics},
	year = {2006},
	publisher = {Springer Berlin Heidelberg},
	organization = {Springer Berlin Heidelberg},
	author = {Darling, Aaron E and Todd Treangen and Zhang, Louxin and Kuiken, Carla and Messeguer, Xavier and Perna, Nicole T}
}
@book {49867,
	title = {Procrastination Leads to Efficient Filtration for Local Multiple Alignment},
	volume = {4175},
	year = {2006},
	pages = {126 - 137},
	publisher = {Springer Berlin Heidelberg},
	organization = {Springer Berlin Heidelberg},
	address = {Berlin, Heidelberg},
	isbn = {978-3-540-39583-6},
	issn = {0302-9743},
	doi = {10.1007/1185156110.1007/11851561_12},
	url = {http://www.springerlink.com/index/10.1007/11851561http://www.springerlink.com/index/pdf/10.1007/11851561http://link.springer.com/10.1007/11851561_12http://www.springerlink.com/index/pdf/10.1007/11851561_12},
	author = {Darling, Aaron E. and Todd Treangen and Zhang, Louxin and Kuiken, Carla and Messeguer, Xavier and Perna, Nicole T.}
}
