Publications
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2010. A model for using a concept inventory as a tool for students' assessment and faculty professional development.. CBE Life Sci Educ. 9(4):408-16.
2010. Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data. Biometrics. 66(3):665-674.
2009. Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.
2009. Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):221.
2009. Mimosa: mixture model of co-expression to detect modulators of regulatory interaction. Algorithms in BioinformaticsAlgorithms in Bioinformatics.
2009. Model-based quality assessment and base-calling for second-generation sequencing data. Johns Hopkins University, Dept. of Biostatistics Working PapersJohns Hopkins University, Dept. of Biostatistics Working Papers.
2009. Modeling and visualization of human activities for multicamera networks. EURASIP Journal on Image and Video ProcessingEURASIP Journal on Image and Video Processing. 2009
2009. Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons. Genome BiologyGenome Biology. 10
2008. The marine environment and human health: the cholera model. Global Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease EmergenceGlobal Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease Emergence.
2008. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135
2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
2008. A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. J Mol EvolJ Mol Evol. 67
2007. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307.
2007. MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC genomicsBMC Genomics. 8
2007. Methods in Molecular BiologyComparative GenomicsAnalyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System. 396:135-152.
2007. Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
2006. A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research CommunicationsBiochemical and Biophysical Research Communications. 347
2006. MCMC data association and sparse factorization updating for real time multitarget tracking with merged and multiple measurements.. IEEE Trans Pattern Anal Mach Intell. 28(12):1960-72.
2006. MCMC Data Association and Sparse Factorization Updating for Real Time Multitarget Tracking with Merged and Multiple Measurements. IEEE Transactions on Pattern Analysis and Machine Intelligence. 28(12):1960-1972.
2006. M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. BMC bioinformatics. 7:433.
2006. Molecular Characterization of Serine-, Alanine-, and Proline-Rich Proteins of Trypanosoma cruzi and Their Possible Role in Host Cell Infection. Infect. Immun.Infect. Immun.. 74