Publications

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Mount SM, Steitz JA.  1981.  Sequence of U1 RNA from Drosophila melanogaster: implications for U1 secondary structure and possible involvement in splicing.. Nucleic Acids Res. 9(23):6351-68.
Mount SM.  1987.  Sequence similarity.. Nature. 325(6104):487.
Nagarajan N., Pop M..  2010.  Sequencing and genome assembly using next-generation technologies. Methods Mol. BiolMethods Mol. Biol. 673
El-Sayed N.M.A, Donelson J.E..  1997.  Sequencing and mapping the African trypanosome genome. Trypanosomiasis and Leishmaniasis: Biology and Control . :51-63.
Bartholomeu D., El‐Sayed NM, Melville S.E.  2004.  Sequencing Strategies for Parasite Genomes. METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-. 270
Bartholomeu D, El-Sayed NM.  2004.  Sequencing strategies for parasite genomes.. Methods Mol Biol. 270:1-16.
Venter J.C.  2002.  Sequencing the human genome. Proceedings of the sixth annual international conference on Computational biology.
Goodheart J, Bely AE.  2017.  Sequestration of nematocysts by divergent cnidarian predators: mechanism, function, and evolution. Invertebrate Biology. 136(1):75-91.
Salzberg SL, Hotopp JCD, Delcher AL, Pop M., Smith DR, Eisen MB, Nelson WC.  2005.  Serendipitous discovery of Wolbachia genomes in multiple Drosophila species. Genome BiologyGenome Biology. 6
Caburlotto G, Haley BJ, Lleò MM, Huq A, Colwell RR.  2010.  Serodiversity and ecological distribution of Vibrio parahaemolyticus in the Venetian Lagoon, Northeast Italy. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Alam M, Chowdhury WB, Bhuiyan N.A, Islam A, Hasan NA, G. Nair B, Watanabe H., Siddique A.K, Huq A, R. Sack B et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
Fermin D.R, Barac A., Lee S., Polster S.P, Hannenhalli S, Bergemann T.L, Grindle S., Dyke D.B, Pagani F., Miller L.W et al..  2008.  Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 1
Nagengast AA, Stitzinger SM, Tseng C-H, Mount SM, Salz HK.  2003.  Sex-lethal splicing autoregulation in vivo: interactions between SEX-LETHAL, the U1 snRNP and U2AF underlie male exon skipping.. Development. 130(3):463-71.
Okrah K, Bravo HCorrada.  2015.  Shape analysis of high-throughput transcriptomics experiment data.. Biostatistics. 16(4):627-40.
Pop M..  2004.  Shotgun Sequence Assembly. Advances in ComputersAdvances in Computers. Volume 60
Colwell RR.  2008.  Silent Sputnik. BioScienceBioScience. 58
Borah M., Bajwa R.S, Hannenhalli S, Irwin M.J.  1994.  A SIMD solution to the sequence comparison problem on the MGAP. International Conference on Application Specific Array Processors, 1994. Proceedings.
Zo Y-G, Colwell RR.  2008.  A simple binomial test for estimating sequencing errors in public repository 16S rRNA sequences. Journal of Microbiological MethodsJournal of Microbiological Methods. 72
Choopun N, Louis V, Huq A, Colwell RR.  2002.  Simple Procedure for Rapid Identification of Vibrio Cholerae from the Aquatic Environment. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68
Cummings MP, Myers D.S.  2004.  Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA. BMC BioinformaticsBMC Bioinformatics. 5
Dillon LAL, Suresh R, Okrah K, Bravo HCorrada, Mosser DM, El-Sayed NM.  2015.  Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions.. BMC Genomics. 16(1):1108.
Selengut J., Rusch DB, Haft DH.  2010.  Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function. BMC bioinformaticsBMC Bioinformatics. 11
Selengut JD, Rusch DB, Haft DH.  2010.  Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.. BMC Bioinformatics. 11:52.
Cummings MP, King L.M, Kellogg E.A.  1994.  Slipped-strand mispairing in a plastid gene: ıt rpoC2 in grasses (Poaceae). Mol Biol EvolMol Biol Evol. 11
Steitz JA, Wolin SL, Rinke J, Pettersson I, Mount SM, Lerner EA, Hinterberger M, Gottlieb E.  1983.  Small ribonucleoproteins from eukaryotes: structures and roles in RNA biogenesis.. Cold Spring Harb Symp Quant Biol. 47 Pt 2:893-900.

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