Publications

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Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut J., Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. NatureNature. 419
Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado CRenato, El‐Sayed NM, Teixeira SMR.  2008.  Sequence diversity and evolution of multigene families in Trypanosoma cruzi. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 157
Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR.  2007.  Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 9
Chandrasekharan N., Hannenhalli S.  1992.  Efficient algorithms for computing matching and chromatic polynomials on series-parallel graphs. Fourth International Conference on Computing and Information, 1992. Proceedings. ICCI '92.
Chazelle B., Kingsford C, Singh M..  2004.  A semidefinite programming approach to side chain positioning with new rounding strategies. INFORMS Journal on ComputingINFORMS Journal on Computing. 16
Chelaru F, Smith L, Goldstein N, Bravo HCorrada.  2014.  Epiviz: interactive visual analytics for functional genomics data.. Nat Methods. 11(9):938-40.
Chelaru F, Bravo éctorCorrada.  2015.  Epiviz: a view inside the design of an integrated visual analysis software for genomics. BMC Bioinformatics. 16(Suppl 11):S4.
Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al..  2010.  Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11
Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S et al..  2011.  Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60
Choi J.H, Tang H., Kim S., Pop M..  2010.  Computational Approaches for Genome Assembly Validation. Biological Data MiningBiological Data Mining.
Choi J, El-Sayed NM.  2012.  Functional genomics of trypanosomatids.. Parasite Immunol. 34(2-3):72-9.
Choi S.S, Hannenhalli S.  2013.  Three independent determinants of protein evolutionary rate. J Mol EvolJ Mol EvolJ Mol Evol. 76:98-111.
Chokesajjawatee N, Zo Y-G, Colwell RR.  2008.  Determination of Clonality and Relatedness of Vibrio Cholerae Isolates by Genomic Fingerprinting, Using Long-Range Repetitive Element Sequence-Based PCR. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74
Choopun N, Louis V, Huq A, Colwell RR.  2002.  Simple Procedure for Rapid Identification of Vibrio Cholerae from the Aquatic Environment. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68
G. Christopher V, Lucia P, Jennifer H.KChoi, Mathieu W, Devan J, J. Pepe H, Jennifer B, Karuna M, J. Alan P, Hannenhalli S et al..  2012.  Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus. Physiological GenomicsPhysiological Genomics.
Chun J., Rivera I.NG, Colwell RR.  2002.  Analysis of 16S-23S rRNA intergenic spacer of Vibrio cholerae and Vibrio mimicus for detection of these species. METHODS IN MOLECULAR BIOLOGYMETHODS IN MOLECULAR BIOLOGY. 179
Chun J., Grim C.J, Hasan N.A, Lee J.H, Choi S.Y, Haley B.J, Taviani E., Jeon Y.S, Kim D.W, Lee J.H et al..  2009.  Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 106
Chung M, Krueger J, Pop M.  2015.  Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities. arXiv preprint arXiv:1509.06926.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.
Clegg M.T, Cummings MP, Durbin M.L.  1997.  The evolution of plant nuclear genes. Proc Natl Acad Sci USAProc Natl Acad Sci USA. 94
Colwell RR.  2005.  Global microbial ecology of Vibrio cholerae. Oceans and health: pathogens in the marine environmentOceans and health: pathogens in the marine environment.
Colwell RR.  2009.  Viable but not cultivable bacteria. Uncultivated MicroorganismsUncultivated Microorganisms.
Colwell RR.  2008.  Silent Sputnik. BioScienceBioScience. 58
Colwell RR, Huq A, M. Islam S, Aziz K.MA, Yunus M., N. Khan H, Mahmud A., R. Sack B, Nair G.B, Chakraborty J. et al..  2003.  Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100

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