Publications

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Berman P., Hannenhalli S, Karpinski M..  2002.  1.375-approximation algorithm for sorting by reversals. Algorithms—ESA 2002Algorithms—ESA 2002.
2
Kingsford C, Nagarajan N, Salzberg SL.  2009.  2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 4
A
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122.
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122.
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.. Genome Biol. 12(12):R122.
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.. Genome Biol. 12(12):R122.
White JR, Navlakha S, Nagarajan N, Ghodsi M-R, Kingsford C, Pop M..  2010.  Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC BioinformaticsBMC Bioinformatics. 11
Joseph SJ, Fernández-Robledo JA, Gardner MJ, El-Sayed NM, Kuo C-H, Schott EJ, Wang H, Kissinger JC, Vasta GR.  2010.  The Alveolate Perkinsus marinus: biological insights from EST gene discovery.. BMC Genomics. 11:228.
Joseph SJ, Fernández-Robledo JA, Gardner MJ, El-Sayed NM, Kuo C-H, Schott EJ, Wang H, Kissinger JC, Vasta GR.  2010.  The Alveolate Perkinsus marinus: biological insights from EST gene discovery.. BMC Genomics. 11:228.
LaCount D.J, El‐Sayed NM, Kaul S., Wanless D., Turner C.MR, Donelson J.E.  2001.  Analysis of a donor gene region for a variant surface glycoprotein and its expression site in African trypanosomes. Nucleic acids researchNucleic Acids Research. 29
Kingsford C, Schatz M., Pop M..  2010.  Assembly complexity of prokaryotic genomes using short reads. BMC bioinformaticsBMC Bioinformatics. 11
Wetzel J., Kingsford C, Pop M..  2011.  Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC bioinformaticsBMC Bioinformatics. 12
Koren S, Treangen T, Hill CM, Pop M, Phillippy AM.  2014.  Automated ensemble assembly and validation of microbial genomes.. BMC Bioinformatics. 15:126.
Balch T, Khan Z, Veloso M.  2001.  Automatically tracking and analyzing the behavior of live insect colonies. the fifth international conferenceProceedings of the fifth international conference on Autonomous agents - AGENTS '01.
B
Koren S, Treangen T, Pop M..  2011.  Bambus 2: Scaffolding Metagenomes. Bioinformatics. 27
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.
C
Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S et al..  2011.  Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60

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