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1997
Agarwala R., Batzoglou S., DanČÍK V., Decatur S.E, Hannenhalli S, Farach M., Muthukrishnan S., Skiena S..  1997.  Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. Journal of Computational BiologyJournal of Computational Biology. 4
King L.M, Cummings MP.  1997.  Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol EvolMol Biol Evol. 14
El-Sayed N.M.A, Donelson J.E..  1997.  Sequencing and mapping the African trypanosome genome. Trypanosomiasis and Leishmaniasis: Biology and Control . :51-63.
El‐Sayed NM, Donelson JE.  1997.  A survey of the Trypanosoma brucei rhodesiense genome using shotgun sequencing. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 84
Arkin EM, Belleville P, Mitchell JSB, Mount D, Romanik K, Salzberg S, Souvaine D.  1997.  Testing simple polygons. Computational GeometryComputational Geometry. 8
1996
Mount SM.  1996.  AT-AC introns: an ATtACk on dogma.. Science. 271(5256):1690-2.
Ruppin E., Horn D., Levy N., Reggia JA.  1996.  Computational studies of synaptic alterations in Alzheimer’s disease. Neural modeling of brain and cognitive disordersNeural modeling of brain and cognitive disorders.
Morgan R.W, El‐Sayed NM, Kepa J.K, Pedram M., Donelson J.E.  1996.  Differential expression of the expression site-associated gene I family in African trypanosomes. Journal of Biological ChemistryJournal of Biological Chemistry. 271
Marks J.C, Cummings MP.  1996.  DNA sequence variation in the ribosomal internal transcribed spacer region of freshwater ıt Cladophora species (Chlorophyta). J PhycolJ Phycol. 32
Blair D., Campos A., Cummings MP, Laclette J.P.  1996.  Evolutionary biology of parasitic platyhelminths: The role of molecular phylogenetics. Parasitol TodayParasitol Today. 12
Berman P, Hannenhalli S.  1996.  Fast sorting by reversal. Combinatorial Pattern MatchingCombinatorial Pattern Matching. 1075
Otto S.P, Cummings MP, Wakeley J..  1996.  Inferring phylogenies from DNA sequence data: The effects of sampling. New Uses for New PhylogeniesNew Uses for New Phylogenies.
Ruppin E., Reggia JA, Horn D..  1996.  A neural model of positive schizophrenic symptoms. Schizophrenia BulletinSchizophrenia Bulletin. 22
Ruppin E., Reggia JA, Horn D..  1996.  Pathogenesis of schizophrenic delusions and hallucinations: a neural model. Schizophrenia bulletinSchizophrenia Bulletin. 22
Hannenhalli S.  1996.  Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied MathematicsDiscrete Applied Mathematics. 71
Hannenhalli S, Feldman W, Lewis HF, Skiena SS, Pevzner PA.  1996.  Positional sequencing by hybridization. Computer applications in the biosciences : CABIOSComputer applications in the biosciences : CABIOS. 12
Peculis BA, Mount SM.  1996.  Ribosomal RNA: small nucleolar RNAs make their mark.. Curr Biol. 6(11):1413-5.
Hannenhalli S, Pevzner P.  1996.  To cut… or not to cut (applications of comparative physical maps in molecular evolution). Proceedings of the seventh annual ACM-SIAM symposium on Discrete algorithms.
1995
El‐Sayed NM, Alarcon CM, Beck JC, Sheffield VC, Donelson JE.  1995.  cDNA expressed sequence tags of Trypanosoma brucei rhodesiense provide new insights into the biology of the parasite. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 73
El‐Sayed NM, Patton C.L, Harkins P.C, Fox R.O, Anderson K..  1995.  Crystallization and preliminary X-ray investigation of the recombinant Trypanosoma brucei rhodesiense calmodulin. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and Bioinformatics. 21
Peng X, Mount SM.  1995.  Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Mol Cell Biol. 15(11):6273-82.
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA.  1995.  Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case. GenomicsGenomics. 30
Hannenhalli S, Chappey C., Koonin E.V, Pevzner P.A,.  1995.  Genome sequence comparison and scenarios for gene rearrangements: A test case. GenomicsGenomics. 30
Guo M, Mount SM.  1995.  Localization of sequences required for size-specific splicing of a small Drosophila intron in vitro.. J Mol Biol. 253(3):426-37.
Ruppin E., Reggia JA, Horn D..  1995.  A neural model of delusions and hallucinations in schizophrenia. Advances in Neural Information Processing SystemsAdvances in Neural Information Processing Systems.

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