Computational methods for optical mapping

TitleComputational methods for optical mapping
Publication TypeJournal Articles
Year of Publication2014
AuthorsMendelowitz L, Pop M
ISBN Number2047-217X
Accession Number25671093
AbstractOptical mapping and newer genome mapping technologies based on nicking enzymes provide low resolution but long-range genomic information. The optical mapping technique has been successfully used for assessing the quality of genome assemblies and for detecting large-scale structural variants and rearrangements that cannot be detected using current paired end sequencing protocols. Here, we review several algorithms and methods for building consensus optical maps and aligning restriction patterns to a reference map, as well as methods for using optical maps with sequence assemblies.