New developments in the InterPro database.
| Title | New developments in the InterPro database. |
| Publication Type | Journal Articles |
| Year of Publication | 2007 |
| Authors | Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJA, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C |
| Journal | Nucleic Acids Res |
| Volume | 35 |
| Issue | Database issue |
| Pagination | D224-8 |
| Date Published | 2007 Jan |
| ISSN | 1362-4962 |
| Keywords | Databases, Protein, Internet, Protein Structure, Tertiary, Proteins, Sequence Analysis, Protein, Systems Integration, User-Computer Interface |
| Abstract | InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html. |
| DOI | 10.1093/nar/gkl841 |
| Alternate Journal | Nucleic Acids Res. |
| PubMed ID | 17202162 |
| PubMed Central ID | PMC1899100 |
| Grant List | 087656 / / Wellcome Trust / United Kingdom BB/F010435/1 / / Biotechnology and Biological Sciences Research Council / United Kingdom |