Publications

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1997
Mount SM.  1997.  Genetic depletion reveals an essential role for an SR protein splicing factor in vertebrate cells.. Bioessays. 19(3):189-92.
DanČÍK V., Hannenhalli S, Muthukrishnan S..  1997.  Hardness of flip-cut problems from optical mapping. Journal of Computational BiologyJournal of Computational Biology. 4
Agarwala R., Batzoglou S., DanČÍK V., Decatur S.E, Hannenhalli S, Farach M., Muthukrishnan S., Skiena S..  1997.  Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. Journal of Computational BiologyJournal of Computational Biology. 4
King L.M, Cummings MP.  1997.  Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol EvolMol Biol Evol. 14
El-Sayed N.M.A, Donelson J.E..  1997.  Sequencing and mapping the African trypanosome genome. Trypanosomiasis and Leishmaniasis: Biology and Control . :51-63.
El‐Sayed NM, Donelson JE.  1997.  A survey of the Trypanosoma brucei rhodesiense genome using shotgun sequencing. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 84
Arkin EM, Belleville P, Mitchell JSB, Mount D, Romanik K, Salzberg S, Souvaine D.  1997.  Testing simple polygons. Computational GeometryComputational Geometry. 8
1998
S. Kosaraju R, Pop M..  1998.  De-amortization of Algorithms. Computing and CombinatoricsComputing and Combinatorics. 1449
Aggarwal A, S. Kosaraju R, Pop M..  1998.  Drawing of Two-Dimensional Irregular Meshes. Graph DrawingGraph Drawing. 1547
Asakura H., Selengut J., Orme-Johnson W.H, Dretler S.P.  1998.  The effect of calprotectin on the nucleation and growth of struvite crystals as assayed by light microscopy in real-time. The Journal of urologyThe Journal of urology. 159
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.
Donelson JE, Hill KL, El‐Sayed NM.  1998.  Multiple mechanisms of immune evasion by African trypanosomes. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 91
Cummings MP, Clegg M.T.  1998.  Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (ıt Hordeum vulgare ssp. ıt spontaneum): an evaluation of the background selection hypothesis. Proc Natl Acad Sci USAProc Natl Acad Sci USA. 95
Campos A., Cummings MP, Reyes J.L, Laclette J.P.  1998.  Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. Mol Phylogenet EvolMol Phylogenet Evol. 10
Cummings MP, Welschmeyer N.A.  1998.  Pigment composition of putatively achlorophyllous angiosperms. Plant Syst EvolPlant Syst Evol. 210
Revett K., Ruppin E., Goodall S., Reggia JA.  1998.  Spreading depression in focal ischemia: A computational study. Journal of Cerebral Blood Flow & MetabolismJournal of Cerebral Blood Flow & Metabolism. 18
Tilghman S., Astin H.S, Brinkley W., Chilton M.D, Cummings MP, Ehrenberg R.G, Fox M.F, Glenn K., Green P.J, Hans S. et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol CellMol Biol Cell. 9
1999
Hannenhalli S, Hayes WS, Hatzigeorgiou AG, Fickett JW.  1999.  Bacterial Start Site Prediction. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 27
Cummings MP, Otto S.P, Wakeley J..  1999.  Genes and other samples of DNA sequence data for phylogenetic inference. The Biological BulletinThe Biological Bulletin. 196
Donelson J.E, Gardner M.J, El‐Sayed NM.  1999.  More surprises from Kinetoplastida. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 96
Donelson J.E., Hill K.L., El-Sayed N.M.A..  1999.  Multiple mechanisms of immune evasion by African trypanosomes. The Trypanosome Surface . :71-91.
Ruppin E., Ofer E., Reggia JA, Revett K..  1999.  Pathogenic mechanisms in ischemic damage: a computational study. Computers in biology and medicineComputers in biology and medicine. 29
Ruppin E., Revett K., Ofer E., Goodall S., Reggia JA.  1999.  Penumbral tissue damage following acute stroke: a computational investigation. Progress in brain researchProgress in brain research. 121
Hannenhalli S, Pevzner PA.  1999.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACMJ. ACM. 46
2000
El‐Sayed NM, Hegde P, Quackenbush J, Melville SE, Donelson JE.  2000.  The African trypanosome genome. International Journal for ParasitologyInternational Journal for Parasitology. 30

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