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Yaklichkin SYu, Darnell DK, Pier MV, Antin PB, Hannenhalli S. 2011. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evolutionary BiologyBMC Evolutionary Biology. 11

Yang S., Wang K., Valladares O., Hannenhalli S, Bucan M.,. 2007. Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome BiolGenome Biol. 8

Ye C, Ma Z.S, Cannon C.H, Pop M., Yu D.W. 2012. Exploiting sparseness in de novo genome assembly. BMC bioinformaticsBMC Bioinformatics. 13

Ye C, Hsiao C, Bravo HCorrada. 2014. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.. Bioinformatics. 30(9):1214-9.

Yizhak K., Chaneton B., Gottlieb E., Ruppin E.. 2015. Modeling cancer metabolism on a genome scale. Molecular Systems Biology. 11(6):817-817.

Yizhak K, Le Dévédec SE, Rogkoti VMaria, Baenke F, de Boer VC, Frezza C, Schulze A, van de Water B, Ruppin E. 2014. A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration.. Mol Syst Biol. 10:744.

Yizhak K, Gaude E, Le Dévédec S, Waldman YY, Stein GY, van de Water B, Frezza C, Ruppin E. 2014. Phenotype-based cell-specific metabolic modeling reveals metabolic liabilities of cancer.. Elife. 3