Publications
2010. Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.. BMC Bioinformatics. 11:52.
2010. Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function. BMC bioinformaticsBMC Bioinformatics. 11
2010. Tackling the widespread and critical impact of batch effects in high-throughput data. Nature reviews. GeneticsNature reviews. Genetics. 11
2010. Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria. Journal of bacteriologyJournal of bacteriology. 192
2010. Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria.. J Bacteriol. 192(21):5788-98.
2010. Validating the systematic position of ıt Plationus Segers, Murugan & Dumont, 1993 (Rotifera: Brachionidae) using sequences of the large subunit of the nuclear ribosomal DNA and of cytochrome C oxidase. HydrobiologiaHydrobiologia. 644
2010. Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.Genome ResearchGenome Res.. 20
2009. 2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 4
2009. Analysis of clonally related environmental Vibrio cholerae O1 El Tor isolated before 1992 from Varanasi, India reveals origin of SXT‐ICEs belonging to O139 and O1 serogroups. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
2009. Assessing Student Understanding of Host Pathogen Interactions Using a Concept Inventory. J. Microbiol. Biol. Ed.. 10:43-50.
2009. Automated classification of bird and amphibian calls using machine learning: A comparison of methods. Ecological Informatics. 4(4):206-214.
2009. Biological agent detection technologies. Molecular Ecology ResourcesMolecular Ecology Resources. 9
2009. Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 106
2009. Complete Genome Sequence of Aggregatibacter (Haemophilus) Aphrophilus NJ8700. Journal of BacteriologyJ. Bacteriol.Journal of BacteriologyJ. Bacteriol.. 191
2009. A cooperative combinatorial Particle Swarm Optimization algorithm for side-chain packing. IEEE Swarm Intelligence Symposium, 2009. SIS '09.
2009. CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome BiologyGenome Biology. 10
2009. Detection of toxigenic Vibrio cholerae O1 in freshwater lakes of the former Soviet Republic of Georgia. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
2009. Determination of relationships among non-toxigenic Vibrio cholerae O1 biotype El Tor strains from housekeeping gene sequences and ribotype patterns. Research in MicrobiologyResearch in Microbiology. 160
2009. Diversity and Seasonality of Bioluminescent Vibrio Cholerae Populations in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
2009. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. J Mach Learn Res. 5:41-48.
2009. Evidence for Coregulation of Myocardial Gene Expression by MEF2 and NFAT in Human Heart FailureCLINICAL PERSPECTIVE. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 2
2009. The evolution of Fox genes and their role in development and disease. Nature reviews. GeneticsNat Rev GenetNature reviews. GeneticsNat Rev Genet. 10
2009. Examining the relative influence of familial, genetic, and environmental covariate information in flexible risk models. Proceedings of the National Academy of Sciences. 106(20):8128-8133.
2009. Extreme polymorphism in a vaccine antigen and risk of clinical malaria: implications for vaccine development. Sci Transl MedSci Transl Med. 1