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Pop M., Salzberg S.L, Shumway M..  2002.  Genome sequence assembly: Algorithms and issues. ComputerComputer. 35
Pop M., Kosack DS, Salzberg SL.  2004.  Hierarchical Scaffolding With Bambus. Genome ResearchGenome Research. 14
Pop M..  2004.  Shotgun Sequence Assembly. Advances in ComputersAdvances in Computers. Volume 60
Pop M, Salzberg SL.  2015.  Use and mis-use of supplementary material in science publications. BMC Bioinformatics. 1632733845166(1)
Pop M., Adviser-Kosaraju S.R.  2000.  Exploiting coherence in spatial database queries.
Pop M, Paulson JN, Chakraborty S, Astrovskaya I, Lindsay BR, Li S, Bravo éctorCorrada, Harro C, Parkhill J, Walker AW et al..  2016.  Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment. BMC Genomics. 17183412111831230710512122489914142853341501081566039108377115651846133171373920352123327102188151723(1326124105778571763174155114260523Suppl 1611Suppl 26-7Suppl 197591Pt 11321131 Suppl241Database issue1612210375335)
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.  2016.  System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84.
Pruzzo C., Tarsi R., Lleò M.M, Signoretto C., Zampini M., Colwell RR, Canepari P..  2002.  In vitro adhesion to human cells by viable but nonculturable Enterococcus faecalis. Current microbiologyCurrent microbiology. 45
Pruzzo C., Huq A., Colwell RR, Donelli G..  2005.  Pathogenic Vibrio species in the marine and estuarine environment. Oceans and health: pathogens in the marine environmentOceans and health: pathogens in the marine environment.
Pruzzo C, Tarsi R, Lleò MDel Mar, Signoretto C, Zampini M, Pane L, Colwell RR, Canepari P.  2003.  Persistence of adhesive properties in Vibrio cholerae after long‐term exposure to sea water. Environmental MicrobiologyEnvironmental Microbiology. 5
Pruzzo C, Vezzulli L, Colwell RR.  2008.  Global impact of Vibrio cholerae interactions with chitin. Environmental MicrobiologyEnvironmental Microbiology. 10
Purdy AE, Balch D, Lizárraga‐Partida MLeonardo, Islam MSirajul, Martinez‐Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP‐ribosylating factor from Vibrio cholerae. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Putt M.E, Hannenhalli S, Lu Y., Haines P., Chandrupatla H.R, Morrisey E.E, Margulies K.B, Cappola T.P.  2009.  Evidence for Coregulation of Myocardial Gene Expression by MEF2 and NFAT in Human Heart FailureCLINICAL PERSPECTIVE. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 2
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Qasim AN, Metkus TS, Tadesse M, Lehrke M, Restine S, Wolfe ML, Hannenhalli S, Cappola T, Rader DJ, Reilly MP.  2009.  Resistin gene variation is associated with systemic inflammation but not plasma adipokine levels, metabolic syndrome or coronary atherosclerosis in nondiabetic Caucasians. Clinical EndocrinologyClinical Endocrinology. 70
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Rabinovich S, Adler L, Yizhak K, Sarver A, Silberman A, Agron S, Stettner N, Sun Q, Brandis A, Helbling D et al..  2015.  Diversion of aspartate in ASS1-deficient tumours fosters de novo pyrimidine synthesis. Nature. 527(7578):379-383.
Rangarajan N, Kulkarni P, Hannenhalli S.  2015.  Evolutionarily conserved network properties of intrinsically disordered proteins.. PLoS One. 10(5):e0126729.
Rasko D.A, Worsham P.L, Abshire T.G, Stanley S.T, Bannan J.D, Wilson M.R, Langham R.J, Decker R.S, Jiang L., Read T.D et al..  2011.  Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 108
Rawlings TK, Ruiz GM, Colwell RR.  2007.  Association of Vibrio Cholerae O1 El Tor and O139 Bengal with the Copepods Acartia Tonsa and Eurytemora Affinis. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 73
Read TD, Salzberg SL, Pop M., Shumway M, Umayam L, Jiang L, Holtzapple E, Busch JD, Smith KL, Schupp JM et al..  2002.  Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus Anthracis. ScienceScienceScienceScience. 296
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. NatureNature. 423
Reggia JA, Ruppin E., Berndt R.S.  1997.  Computer models: A new approach to the investigation of disease. MD ComputingMD Computing. 14
Regier JC, Mitter C, M. SOLIS ALMA, HAYDEN JAMESE, LANDRY BERNARD, NUSS MATTHIAS, Simonsen TJ, Yen S-H, Zwick A, Cummings MP.  2012.  A molecular phylogeny for the pyraloid moths (Lepidoptera: Pyraloidea) and its implications for higher-level classification. Systematic Entomology. 37(4):635-656.
Regier J.C, Shultz J.W, Ganley A.RD, Hussey A., Shi D., Ball B., Zwick A., Stajich J.E, Cummings MP, Martin J.W et al..  2008.  Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Syst BiolSyst Biol. 57
Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn J-C, Zwickl DJ, Cho S, Davis DR et al..  2013.  A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLoS OnePLoS One. 8
Regier JC, Mitter C, Davis DR, HARRISON TERRYL, Sohn J-C, Cummings MP, Zwick A, Mitter KT.  2014.  A molecular phylogeny and revised classification for the oldest ditrysian moth lineages (Lepidoptera: Tineoidea), with implications for ancestral feeding habits of the mega-diverse Ditrysia. Systematic Entomology. 40:409-432.

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