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Journal Articles
Bazinet AL, Cummings MP, Mitter KT, Mitter CW.  2013.  Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study PLoS One. 8
Bazinet AL, Cummings MP, Mitter KT, Mitter CW.  2013.  Can RNA-Seq resolve the rapid radiation of advanced moths and butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An exploratory study PLoS One. 8
Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S et al..  2011.  Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60
Lee S.H, Kalejta R.F, Kerry J., Semmes O.J, O'Connor C.M, Khan Z., Garcia B.A, Shenk T., Murphy E..  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.
Das A, Morley M, Moravec CS, Tang W.HW, Hakonarson H, Ashley EA, Brandimarto J, Hu R, Li M, Li H et al..  2015.  Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6:8555.
Das A, Morley M, Moravec CS, Tang W.HW, Hakonarson H, Ashley EA, Brandimarto J, Hu R, Li M, Li H et al..  2015.  Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6:8555.
Das A, Morley M, Moravec CS, Tang W.HW, Hakonarson H, Ashley EA, Brandimarto J, Hu R, Li M, Li H et al..  2015.  Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6:8555.
Mount SM.  1996.  AT-AC introns: an ATtACk on dogma.. Science. 271(5256):1690-2.
Marbach-Ad G., Briken V., El-Sayed N.M., Frauwirth K., Fredericksen B., Hutcheson S., Gao L.-Y., Joseph S., Lee V., McIver K.S. et al..  2009.  Assessing Student Understanding of Host Pathogen Interactions Using a Concept Inventory. J. Microbiol. Biol. Ed.. 10:43-50.
Marbach-Ad G., Briken V., El-Sayed N.M., Frauwirth K., Fredericksen B., Hutcheson S., Gao L.-Y., Joseph S., Lee V., McIver K.S. et al..  2009.  Assessing Student Understanding of Host Pathogen Interactions Using a Concept Inventory. J. Microbiol. Biol. Ed.. 10:43-50.
Marbach-Ad G., Briken V., El-Sayed N.M., Frauwirth K., Fredericksen B., Hutcheson S., Gao L.-Y., Joseph S., Lee V., McIver K.S. et al..  2009.  Assessing Student Understanding of Host Pathogen Interactions Using a Concept Inventory. J. Microbiol. Biol. Ed.. 10:43-50.
Lerner MR, Boyle JA, Mount SM, Wolin SL, Steitz JA.  1980.  Are snRNPs involved in splicing? Nature. 283(5743):220-4.
Darling AE, Treangen T, Messeguer X, Perna NT.  2007.  Analyzing patterns of microbial evolution using the mauve genome alignment system. Comparative Genomics. :135–152.
Mohapatra SS, Mantri CK, Mohapatra H, Colwell RR, Singh DV.  2009.  Analysis of clonally related environmental Vibrio cholerae O1 El Tor isolated before 1992 from Varanasi, India reveals origin of SXT‐ICEs belonging to O139 and O1 serogroups. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Mohapatra SS, Mantri CK, Mohapatra H, Colwell RR, Singh DV.  2009.  Analysis of clonally related environmental Vibrio cholerae O1 El Tor isolated before 1992 from Varanasi, India reveals origin of SXT‐ICEs belonging to O139 and O1 serogroups. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Mohapatra SS, Mantri CK, Mohapatra H, Colwell RR, Singh DV.  2009.  Analysis of clonally related environmental Vibrio cholerae O1 El Tor isolated before 1992 from Varanasi, India reveals origin of SXT‐ICEs belonging to O139 and O1 serogroups. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Lin H.C, Goldstein S., Mendelowitz L., Zhou S., Wetzel J., Schwartz D.C, Pop M..  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformaticsBMC Bioinformatics. 13
El‐Sayed NM, Hegde P, Quackenbush J, Melville SE, Donelson JE.  2000.  The African trypanosome genome. International Journal for ParasitologyInternational Journal for Parasitology. 30
R. Sack B, A. Siddique K, Longini IM, Nizam A, Yunus M, M. Islam S, Morris, Ali A, Huq A, G. Nair B et al..  2003.  A 4-Year Study of the Epidemiology of Vibrio Cholerae in Four Rural Areas of Bangladesh. Journal of Infectious DiseasesJ Infect Dis.Journal of Infectious DiseasesJ Infect Dis.. 187
Journal Article
Dillon LAL, Okrah K, V Hughitt K, Suresh R, Li Y, Fernandes MCecilia, A Belew T, Bravo HCorrada, Mosser DM, El-Sayed NM.  2015.  Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation.. Nucleic Acids Res. 43(14):6799-813.
Patro R, Mount SM, Kingsford C.  2014.  Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.. Nat Biotechnol. 32(5):462-4.
Akula N, Barb J, Jiang X, Wendland JR, Choi KH, Sen SK, Hou L, Chen DTW, Laje G, Johnson K et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.. Mol Psychiatry. 19(11):1179-85.
Akula N, Barb J, Jiang X, Wendland JR, Choi KH, Sen SK, Hou L, Chen DTW, Laje G, Johnson K et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.. Mol Psychiatry. 19(11):1179-85.
Liu Y, Morley M, Brandimarto J, Hannenhalli S, Hu Y, Ashley EA, Tang WHWilson, Moravec CS, Margulies KB, Cappola TP et al..  2015.  RNA-Seq identifies novel myocardial gene expression signatures of heart failure.. Genomics. 105(2):83-9.

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