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A

Diehl S, Diehl F, El-Sayed NM, Clayton C, Hoheisel JD. 2002. Analysis of stage-specific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray.. Mol Biochem Parasitol. 123(2):115-23.

Lerner MR, Boyle JA, Mount SM, Wolin SL, Steitz JA. 1980. Are snRNPs involved in splicing? Nature. 283(5743):220-4.

Mount SM. 1996. AT-AC introns: an ATtACk on dogma.. Science. 271(5256):1690-2.

B

Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O'Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E. 2012. BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.

Ye C, Hsiao C, Bravo HCorrada. 2014. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.. Bioinformatics. 30(9):1214-9.

C

Mount SM. 1982. A catalogue of splice junction sequences.. Nucleic Acids Res. 10(2):459-72.

Hotopp JCDunning, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Eisen J, Seshadri R, Ren Q, Wu M et al.. 2006. Comparative genomics of emerging human ehrlichiosis agents. PLoS geneticsPLoS genetics. 2

D

Kim R., Kulkarni P., Hannenhalli S. 2013. Derepression of Cancer/testis antigens in cancer is associated with distinct patterns of DNA hypomethylation. BMC CancerBMC CancerBMC Cancer. 13:144.

Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, M Hossain A, Oundo J, Tamboura B, Mai V, Astrovskaya I et al.. 2014. Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.. Genome Biol. 15(6):R76.

Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià-Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y et al.. 2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.

E

Uziel O, Yosef N, Sharan R, Ruppin E, Kupiec M, Kushnir M, Beery E, Cohen-Diker T, Nordenberg J, Lahav M. 2015. The effects of telomere shortening on cancer cells: a network model of proteomic and microRNA analysis.. Genomics. 105(1):5-16.

Malin J., Aniba M.R, Hannenhalli S. 2013. Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 41:6828-38.

Rangarajan N, Kulkarni P, Hannenhalli S. 2015. Evolutionarily conserved network properties of intrinsically disordered proteins.. PLoS One. 10(5):e0126729.

Lin C-F, Mount SM, Jarmołowski A, Makałowski W. 2010. Evolutionary dynamics of U12-type spliceosomal introns.. BMC Evol Biol. 10:47.

F

Dogan RIslamaj, Getoor L, W Wilbur J, Mount SM. 2007. Features generated for computational splice-site prediction correspond to functional elements.. BMC Bioinformatics. 8:410.

Choi J, El-Sayed NM. 2012. Functional genomics of trypanosomatids.. Parasite Immunol. 34(2-3):72-9.

G

Bravo HCorrada, Pihur V, McCall M, Irizarry RA, Leek JT. 2012. Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC bioinformaticsBMC Bioinformatics. 13

Teixeira SM, El-Sayed NM, Araújo PR. 2011. The genome and its implications.. Adv Parasitol. 75:209-30.

Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al.. 2002. Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419

Severance S, Rajagopal A, Rao AU, Cerqueira GC, Mitreva M, El-Sayed NM, Krause M, Hamza I. 2010. Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.. PLoS Genet. 6(7):e1001044.

Smircich P, Forteza D, El-Sayed NM, Garat B. 2013. Genomic analysis of sequence-dependent DNA curvature in Leishmania.. PLoS One. 8(4):e63068.

Mount SM. 2000. Genomic sequence, splicing, and gene annotation.. Am J Hum Genet. 67(4):788-92.

Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y. 2015. Genomic variation. Impact of regulatory variation from RNA to protein.. Science. 347(6222):664-7.

Blanco MAndres, LeRoy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y. 2012. Global secretome analysis identifies novel mediators of bone metastasis.. Cell Res. 22(9):1339-55.

I

Bennett J., Dretler S.P, Selengut J., Orme-Johnson W.H. 1994. Identification of the calcium-binding protein calgranulin in the matrix of struvite stones. Journal of endourology / Endourological SocietyJournal of endourology / Endourological Society. 8

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