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1993
Mount S, Henikoff S.  1993.  Gene organization: nested genes take flight.. Curr Biol. 3(6):372-4.
1995
Peng X, Mount SM.  1995.  Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor.. Mol Cell Biol. 15(11):6273-82.
Hannenhalli S, Chappey C., Koonin E.V, Pevzner P.A,.  1995.  Genome sequence comparison and scenarios for gene rearrangements: A test case. GenomicsGenomics. 30
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA.  1995.  Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case. GenomicsGenomics. 30
1997
Mount SM.  1997.  Genetic depletion reveals an essential role for an SR protein splicing factor in vertebrate cells.. Bioessays. 19(3):189-92.
1998
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.
1999
Cummings MP, Otto S.P, Wakeley J..  1999.  Genes and other samples of DNA sequence data for phylogenetic inference. The Biological BulletinThe Biological Bulletin. 196
2000
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF et al..  2000.  The genome sequence of Drosophila melanogaster.. Science. 287(5461):2185-95.
Mount SM.  2000.  Genomic sequence, splicing, and gene annotation.. Am J Hum Genet. 67(4):788-92.
2002
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut J., Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. NatureNature. 419
Pop M., Salzberg S.L, Shumway M..  2002.  Genome sequence assembly: Algorithms and issues. ComputerComputer. 35
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Zo Y.G, Rivera I.NG, Russek-Cohen E., Islam M.S, Siddique A.K, Yunus M., Sack R.B, Huq A., Colwell RR.  2002.  Genomic profiles of clinical and environmental isolates of Vibrio cholerae O1 in cholera-endemic areas of Bangladesh. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 99
2003
Neel M.C, Cummings MP.  2003.  Genetic consequences of ecological reserve design guidelines: An empirical investigation. Conserv GenetConserv Genet. 4
Methé B.A, Nelson K.E, Eisen J.A, Paulsen I.T, Nelson W., Heidelberg J.F, Wu D., Wu M., Ward N., Beanan M.J et al..  2003.  Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (New York, N.Y.)Science (New York, N.Y.). 302
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. NatureNature. 423
2004
Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S et al..  2004.  Gene synteny and evolution of genome architecture in trypanosomatids.. Mol Biochem Parasitol. 134(2):183-91.
Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al..  2004.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432
Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al..  2004.  The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22
2005
Wang J, Hannenhalli S.  2005.  Generalizations of Markov model to characterize biological sequences. BMC BioinformaticsBMC Bioinformatics. 6
MacLeod A., Tweedie A., McLellan S., Taylor S., Hall N., Berriman M., El‐Sayed NM, Hope M., Turner C.MR, Tait A..  2005.  The genetic map and comparative analysis with the physical map of Trypanosoma brucei. Nucleic acids researchNucleic Acids Research. 33
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, A. Durkin S et al..  2005.  Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 102
Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C, Lennard N.J, Caler E., Hamlin N.E, Haas B. et al..  2005.  The genome of the African trypanosome Trypanosoma brucei. ScienceScience. 309
Loftus B., Anderson I., Davies R., Alsmark U.CM, Samuelson J., Amedeo P., Roncaglia P., Berriman M., Hirt R.P, Mann B.J et al..  2005.  The genome of the protist parasite Entamoeba histolytica. NatureNature. 433
Haft DH, Selengut J., Brinkac LM, Zafar N, White O.  2005.  Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics (Oxford, England)Bioinformatics (Oxford, England). 21

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