Publications

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Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT.  2006.  Procrastination leads to efficient filtration for local multiple alignment. International Workshop on Algorithms in Bioinformatics.
Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT.  2006.  Procrastination Leads to Efficient Filtration for Local Multiple Alignment. 4175:126-137.
G. de Magny C, Long W., Brown C.W, Hood R.R, Huq A., Murtugudde R., Colwell RR.  2009.  Predicting the distribution of Vibrio spp. in the Chesapeake Bay: a Vibrio cholerae case study. EcoHealthEcoHealth. 6
De Magny GConstantin, Mozumder PK, Grim CJ, Hasan NA, M. Naser N, Alam M, Sack B, Huq A, Colwell RR.  2011.  Population Dynamics of Vibrio Cholerae and Cholera in the Bangladesh Sundarbans: Role of Zooplankton Diversity. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol..
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Eng K.H, Bravo HCorrada, Keles S..  2009.  A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolutionMolecular biology and evolution. 26
Espeland EM, Lipp EK, Huq A, Colwell RR.  2004.  Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 6
Everett L., Vo A., Hannenhalli S.  2009.  PTM-Switchboard—a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic acids researchNucleic Acids Research. 37
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Faruque SM, Kamruzzaman M., Meraj IM, Chowdhury N, G. Nair B, R. Sack B, Colwell RR, Sack DA.  2003.  Pathogenic Potential of Environmental Vibrio Cholerae Strains Carrying Genetic Variants of the Toxin-Coregulated Pilus Pathogenicity Island. Infection and ImmunityInfect. Immun.Infection and ImmunityInfect. Immun.. 71
Folger O, Jerby L, Frezza C, Gottlieb E, Ruppin E, Shlomi T.  2011.  Predicting selective drug targets in cancer through metabolic networks.. Mol Syst Biol. 7:501.
Förster H., Cummings MP, Coffey M.D.  2000.  Phylogenetic relationships of ıt Phytophthora species based on ribosomal ITS I DNA sequence analysis with emphasis on Waterhouse groups V and VI. Mycol ResMycol Res. 104
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García-Varela M., Cummings MP, G. de León P-P, Gardner S.L, Laclette J.P.  2002.  Phylogenetic analysis based on 18S ribosomal RNA gene sequences supports the existence of class Polyacanthocephala (Acanthocephala). Mol Phylogenet EvolMol Phylogenet Evol. 23
García-Varela M., G. de León P-P, de la Torre P., Cummings MP, Sarma S.S, Laclette J.P.  2000.  Phylogenetic relationships of Acanthocephala based on analysis of 18S ribosomal RNA gene sequences. J Mol EvolJ Mol Evol. 50
H
Hadley D., Murphy T., Valladares O., Hannenhalli S, Ungar L., Kim J., Bucan M.,.  2006.  Patterns of sequence conservation in presynaptic neural genes. Genome BiolGenome Biol. 7
Haley BJ, Grim CJ, Hasan NA, Taviani E, Jongsik C, Brettin TS, Bruce DC, Challacombe JF, J. Detter C, Han CS et al..  2010.  The pre‐seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Hannenhalli S.  1996.  Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied MathematicsDiscrete Applied Mathematics. 71
Hannenhalli S.  1995.  Polynomial-time algorithm for computing translocation distance between genomes. Combinatorial Pattern MatchingCombinatorial Pattern Matching.

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