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A
Akula N., Barb J., Jiang X., Wendland J.R, Choi K.H, Sen S.K, Hou L., Chen D.TW, Laje G., Johnson K. et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder. Molecular psychiatry.
Akula N, Barb J, Jiang X, Wendland JR, Choi KH, Sen SK, Hou L, Chen DTW, Laje G, Johnson K et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.. Mol Psychiatry. 19(11):1179-85.
B
Bringaud F, Ghedin E, El‐Sayed NM, Papadopoulou B.  2008.  Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10
C
Chung M, Krueger J, Pop M.  2015.  Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities. arXiv preprint arXiv:1509.06926.
Colwell RR, Huq A, M. Islam S, Aziz K.MA, Yunus M., N. Khan H, Mahmud A., R. Sack B, Nair G.B, Chakraborty J. et al..  2003.  Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
Coutard F,, Crassous P, Droguet M,, Gobin E, Colwell RR, Pommepuy M, Hervio-Heath D.  2007.  Recovery in culture of viable but nonculturable Vibrio parahaemolyticus: regrowth or resuscitation? The ISME JournalThe ISME journal. 1
Cummings MP.  1991.  Review of Fundamentals of Molecular Evolution, by Li. W.-H. and D. Graur. CladisticsCladistics. 7
D
De Magny GConstantin, Mozumder PK, Grim CJ, Hasan NA, M. Naser N, Alam M, R. Sack B, Huq A, Colwell RR.  2011.  Role of Zooplankton Diversity in Vibrio Cholerae Population Dynamics and in the Incidence of Cholera in the Bangladesh Sundarbans. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 77
E
Everett L., Hansen M., Hannenhalli S.  2010.  Regulating the regulators: modulators of transcription factor activity. Methods Mol. BiolMethods Mol. Biol. 674
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Goodheart J, Bazinet AL, Collins AG, CUMMINGS MICHAELP.  2015.  Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation. Royal Society Open Science. 23547143619757560685451171766(9):150196.
Goodheart J, Valdés Á.  2013.  Re-evaluation of the Doriopsilla areolata Bergh, 1880 (Mollusca: Opisthobranchia) subspecies complex in the eastern Atlantic Ocean and its relationship to South African Doriopsilla miniata (Alder & Hancock, 1864) based on molecular data. Marine Biodiversity. 43(2):113-120.
Grim CJ, Zo Y-G, Hasan NA, Ali A, Chowdhury WB, Islam A, Rashid MH, Alam M, J. Morris G, Huq A et al..  2009.  RNA Colony Blot Hybridization Method for Enumeration of Culturable Vibrio Cholerae and Vibrio Mimicus Bacteria. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
H
Hannenhalli S, Pevzner P.A.  1995.  Reversals do not cut long strips.
Hinsch H, Hannenhalli S.  2006.  Recurring genomic breaks in independent lineages support genomic fragility. BMC Evolutionary BiologyBMC Evolutionary Biology. 6
K
Khan Z., Balch T., Dellaert F..  2004.  A Rao-Blackwellized particle filter for eigentracking. Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004.Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..
M Kumar S, Plotkin JB, Hannenhalli S.  2015.  Regulated CRISPR Modules Exploit a Dual Defense Strategy of Restriction and Abortive Infection in a Model of Prokaryote-Phage Coevolution.. PLoS Comput Biol. 11(11):e1004603.
L
Lewinski M.K, Yamashita M., Emerman M., Ciuffi A., Marshall H., Crawford G., Collins F., Shinn P., Leipzig J., Hannenhalli S et al..  2006.  Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS pathogensPLoS pathogens. 2
Liu Y, Morley M, Brandimarto J, Hannenhalli S, Hu Y, Ashley EA, Tang WHWilson, Moravec CS, Margulies KB, Cappola TP et al..  2015.  RNA-Seq identifies novel myocardial gene expression signatures of heart failure.. Genomics. 105(2):83-9.
M
Maximo A., Patro R., Varshney A, Farias R..  2011.  A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing. Graphical ModelsGraphical Models. 73
Mokryn O, Wagner A, Blattner M, Ruppin E, Shavitt Y.  2016.  The Role of Temporal Trends in Growing Networks.. PLoS One. 11(8):e0156505.
Mount SM.  1983.  RNA processing. Sequences that signal where to splice.. Nature. 304(5924):309-10.
Mount SM, Wolin SL.  2015.  Recognizing the 35th anniversary of the proposal that snRNPs are involved in splicing.. Mol Biol Cell. 26(20):3557-60.
N
Nahar S, Sultana M, M. Naser N, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, R. Sack B et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in MicrobiologyFront MicrobiolFrontiers in MicrobiologyFront Microbiol. 2
Navlakha S., Schatz M.C, Kingsford C.  2009.  Revealing biological modules via graph summarization. Journal of Computational BiologyJournal of Computational Biology. 16
P
Parker HS, Bravo HCorrada, Leek JT.  2014.  Removing batch effects for prediction problems with frozen surrogate variable analysis.. PeerJ. 2:e561.

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