Publications

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Zhang X-N, Mount SM.  2009.  Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.. Plant Physiol. 150(3):1450-8.
Sethupathy P, Hannenhalli S.  2008.  A Tutorial of the Poisson Random Field Model in Population Genetics. Advances in BioinformaticsAdvances in Bioinformatics. 2008
Bartholomeu DC, Silva RA, Galvão LMC, el-Sayed NMA, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression.. Exp Parasitol. 102(3-4):123-33.
Bartholomeu DC, Silva RA, Galvão LMC, El‐Sayed NM, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression. Experimental ParasitologyExperimental Parasitology. 102
Westenberger SJ, Cerqueira GC, El-Sayed NM, Zingales B, Campbell DA, Sturm NR.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region.. BMC Genomics. 7:60.
Westenberger S, Cerqueira G, El‐Sayed NM, Zingales B, Campbell D, Sturm N.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC GenomicsBMC Genomics. 7
Bringaud F, Bartholomeu DC, Blandin G, Delcher A, Baltz T, el-Sayed NMA, Ghedin E.  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.. Mol Biol Evol. 23(2):411-20.
Bringaud F., Bartholomeu D.C, Blandin G., Delcher A., Baltz T., El‐Sayed NM, Ghedin E..  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23
Tilghman S., Astin H.S, Brinkley W., Chilton M.D, Cummings MP, Ehrenberg R.G, Fox M.F, Glenn K., Green P.J, Hans S. et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol CellMol Biol Cell. 9
Singh L.N, Wang L.S, Hannenhalli S.  2007.  TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic acids researchNucleic Acids Research. 35
Cummings MP.  1994.  Transmission patterns of eukaryotic transposable elements - arguments for and against horizontal transfer. Trends Ecol EvolTrends Ecol Evol. 9
Hannenhalli S, Pevzner P.A.  1995.  Transforming men into mice (polynomial algorithm for genomic distance problem). Foundations of Computer Science, Annual IEEE Symposium on.
Hannenhalli S.  1995.  Transforming men into mice (a computational theory of genome rearrangements).
Hannenhalli S, Pevzner PA.  1999.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACMJ. ACM. 46
Hannenhalli S, Pevzner P.  1995.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. Proceedings of the twenty-seventh annual ACM symposium on Theory of computing.
Snellman E.A, Colwell RR.  2008.  Transesterification activity of a novel lipase from Acinetobacter venetianus RAG-1. Antonie van LeeuwenhoekAntonie van Leeuwenhoek. 94
Dillon LAL, Okrah K, V Hughitt K, Suresh R, Li Y, Fernandes MCecilia, A Belew T, Bravo HCorrada, Mosser DM, El-Sayed NM.  2015.  Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation.. Nucleic Acids Res. 43(14):6799-813.
Li Y, Shah-Simpson S, Okrah K, A Belew T, Choi J, Caradonna KL, Padmanabhan P, Ndegwa DM, M Temanni R, Bravo HCorrada et al..  2016.  Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection.. PLoS Pathog. 12(4):e1005511.
Everett LJ, Jensen ST, Hannenhalli S.  2011.  Transcriptional Regulation Via TF-Modifying Enzymes: An Integrative Model-Based Analysis. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 39
Hannenhalli S, Levy S.  2003.  Transcriptional regulation of protein complexes and biological pathways. Mammalian GenomeMammalian Genome. 14
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, el-Sayed NMA, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non-lethal cold shock.. Environ Microbiol. 7(6):789-97.
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El‐Sayed NM, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental MicrobiologyEnvironmental Microbiology. 7
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. CirculationCirculation. 114
Dingermann T, Sharp S, Appel B, DeFranco D, Mount S, Heiermann R, Pongs O, Söll D.  1981.  Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract.. Nucleic Acids Res. 9(16):3907-18.
Tootle TL, Silver SJ, Davies EL, Newman V, Latek RR, Mills IA, Selengut J., Parlikar BEW, Rebay I.  2003.  The transcription factor Eyes absent is a protein tyrosine phosphatase. NatureNature. 426

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