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Huq A, Whitehouse CA, Grim CJ, Alam M, Colwell RR. 2008. Biofilms in water, its role and impact in human disease transmission. Current Opinion in BiotechnologyCurrent Opinion in Biotechnology. 19

Simola D.F, Bucan M., Dalva M., Hannenhalli S, Liebhaber S., Ungar L.. 2005. Bioinformatic Prediction of mRNA Targets of the Fragile X Mental Retardation Protein.

Gevers D, Pop M., Schloss PD, Huttenhower C. 2012. Bioinformatics for the Human Microbiome Project. PLOS Computational BiologyPLOS Computational Biology. 8

Hannenhalli S. 2008. BIOINFORMATICS REVIEW. BIOINFORMATICSBioinformatics. 24

Lee S., Wang T.D, Hashmi N., Cummings MP. 2007. Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp SystFuture Generation Comp Syst. 23

Ye C, Hsiao C, Bravo HCorrada. 2014. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.. Bioinformatics. 30(9):1214-9.

C

Talledo M, Rivera ING, Lipp EK, Neale A, Karaolis D, Huq A, Colwell RR. 2003. Characterization of a Vibrio cholerae phage isolated from the coastal water of Peru. Environmental MicrobiologyEnvironmental Microbiology. 5

Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M., Jin Z, Lambris JD, Geisbrecht BV. 2007. Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological ChemistryJournal of Biological Chemistry. 282

Ishimori N., Walsh K., Zheng X., Lu F., Hannenhalli S, Nusskern D., Mural R., Paigen B.. 2004. CHARACTERIZATION OF< i> Ath17, A QUANTITATIVE TRAIT LOCUS FOR ATHEROSCLEROSIS SUSCEPTIBILITY BETWEEN C57BL/6J AND 129S1/SvImJ; SINGLE-NUCLEOTIDE POLYMORPHISMS HAVE IMPORTANT IMPLICATIONS ON IDENTIFYING ATHEROSCLEROSIS MODIFIER GENES. Cardiovascular PathologyCardiovascular Pathology. 13

Ivanova EP, Matte GR, Matte MH, Coenye T, Huq A, Colwell RR. 2002. Characterization of Pseudoalteromonas citrea and P. nigrifaciens Isolated from Different Ecological Habitats Based on REP-PCR Genomic Fingerprints. Systematic and Applied MicrobiologySystematic and Applied Microbiology. 25

Wang K, Cao K, Hannenhalli S. 2015. Chromatin and genomic determinants of alternative splicing. BCB '15 Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics .

Alam M., Islam A., Bhuiyan N.A, Rahim N., Hossain A., Khan G.Y, Ahmed D., Watanabe H., Izumiya H., Faruque A.SG et al.. 2011. Clonal transmission, dual peak, and off-season cholera in Bangladesh. Infection Ecology & EpidemiologyInfection Ecology & Epidemiology. 1

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P. 2002. Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77

Read TD, Salzberg SL, Pop M., Shumway M, Umayam L, Jiang L, Holtzapple E, Busch JD, Smith KL, Schupp JM et al.. 2002. Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus Anthracis. ScienceScienceScienceScience. 296

Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrázek J, Ren Q, Paulsen IT, Nelson KE et al.. 2006. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. Journal of bacteriologyJournal of bacteriology. 188

Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrázek J, Ren Q, Paulsen IT, Nelson KE et al.. 2006. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. Journal of bacteriologyJournal of bacteriology. 188

Hasan NA, Grim CJ, Haley BJ, Jongsik C, Alam M, Taviani E, Mozammel H, A. Munk C, Colwell RR. 2010. Comparative Genomics of Clinical and Environmental Vibrio Mimicus. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 107

Hasan NA, Grim CJ, Haley BJ, Jongsik C, Alam M, Taviani E, Mozammel H, A. Munk C, Colwell RR. 2010. Comparative Genomics of Clinical and Environmental Vibrio Mimicus. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 107

Hotopp JCDunning, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Eisen J, Seshadri R, Ren Q, Wu M et al.. 2006. Comparative genomics of emerging human ehrlichiosis agents. PLoS geneticsPLoS genetics. 2

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