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Ronquist F., Teslenko M., van der Mark P., Ayres D.L, Darling A., Hohna S., Larget B., Liu L., Suchard M.A, Huelsenbeck J.P. 2012. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology. 61:539-542.

Ronquist F., Teslenko M., van der Mark P., Ayres D.L, Darling A., Hohna S., Larget B., Liu L., Suchard M.A, Huelsenbeck J.P. 2012. MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology. 61:539-542.

Liu R, Hannenhalli S, Bucan M. 2009. Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons. Genome BiologyGenome Biology. 10

Sohn J.C, Regier J.C, Mitter C., Davis D., Landry J.F, Zwick A., Cummings MP. 2013. A molecular phylogeny for Yponomeutoidea (Insecta, Lepidoptera, Ditrysia) and its implications for classification, biogeography and\ the evolution of host plant use. PLoS One.

Regier JC, Mitter C, M. SOLIS ALMA, HAYDEN JAMESE, LANDRY BERNARD, NUSS MATTHIAS, Simonsen TJ, Yen S-H, Zwick A, Cummings MP. 2012. A molecular phylogeny for the pyraloid moths (Lepidoptera: Pyraloidea) and its implications for higher-level classification. Systematic Entomology. 37(4):635-656.

Kohlsdorf T., Cummings MP, Lynch V.J, Stopper G.F, Takahashi K., Wagner G.P. 2008. A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. J Mol EvolJ Mol Evol. 67

Marbach-Ad G, McAdams KC, Benson S, Briken V, Cathcart L, Chase M, El-Sayed NM, Frauwirth K, Fredericksen B, Joseph SW et al.. 2010. A model for using a concept inventory as a tool for students' assessment and faculty professional development.. CBE Life Sci Educ. 9(4):408-16.

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Field D, Garrity G, Gray T, Morrison N, Selengut J., Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV et al.. 2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26

Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA. 2014. Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.. Bioinformatics. 30(10):1363-9.

Lindsay B., Oundo J., Hossain M.A, Antonio M., Tamboura B., Walker A.W, Paulson J.N, Parkhill J., Omore R., Faruque A.S et al.. 2015. Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.

Lindsay B., Oundo J., Hossain M.A, Antonio M., Tamboura B., Walker A.W, Paulson J.N, Parkhill J., Omore R., Faruque A.S et al.. 2015. Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.

Lindsay B., Oundo J., Hossain M.A, Antonio M., Tamboura B., Walker A.W, Paulson J.N, Parkhill J., Omore R., Faruque A.S et al.. 2015. Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.

Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM. 2007. Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8

Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR. 2003. Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5

Liu B, Gibbons T., Ghodsi M., Pop M.. 2010. MetaPhyler: Taxonomic profiling for metagenomic sequences. 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Liu B, Pop M.. 2011. MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC ProceedingsBMC Proceedings. 5

Treangen T, Koren S., Sommer D.D, Liu B., Astrovskaya I, Ondov B., Darling A.E, Phillippy A.M, Pop M.. 2013. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome BiolGenome Biol. 14

Selengut J., Levine R.L. 2000. MDP-1: A novel eukaryotic magnesium-dependent phosphatase. BiochemistryBiochemistry. 39

Wan L.B, Pan H., Hannenhalli S, Cheng Y., Ma J., Fedoriw A., Lobanenkov V., Latham K.E, Schultz R.M, Bartolomei M.S. 2008. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135

Wan L.B, Pan H., Hannenhalli S, Cheng Y., Ma J., Fedoriw A., Lobanenkov V., Latham K.E, Schultz R.M, Bartolomei M.S. 2008. Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development. DevelopmentDevelopment. 135

L

Regier JC, Mitter C, Zwick A, Bazinet AL, Cummings MP, Kawahara AY, Sohn J-C, Zwickl DJ, Cho S, Davis DR et al.. 2013. A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLoS OnePLoS One. 8

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