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Mahmoudabadi G, Rajagopalan K, Getzenberg RH, Hannenhalli S, Rangarajan G, Kulkarni P.  2013.  Intrinsically disordered proteins and conformational noise: Implications in cancer. Cell CycleCell Cycle. 12
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40
Stempler S, Yizhak K, Ruppin E.  2014.  Integrating Transcriptomics with Metabolic Modeling Predicts Biomarkers and Drug Targets for Alzheimer's Disease. PLoS ONE. 9(8):e105383.
Shan L., Yang H.-C., Rabi S.A, Bravo H.C, Shroff N.S, Irizarry R.A, Zhang H., Margolick J.B, Siliciano J.D, Siliciano R.F.  2011.  Influence of Host Gene Transcription Level and Orientation on HIV-1 Latency in a Primary-Cell Model. Journal of Virology. 85(11):5384-5393.
Shan L, Yang H-C, S. Rabi A, Bravo HCorrada, Shroff NS, Irizarry RA, Zhang H, Margolick JB, Siliciano JD, Siliciano RF.  2011.  Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model. Journal of virologyJournal of virology. 85
Takala-Harrison S., Jacob C.G, Arze C., Cummings MP, Silva J.C, Dondorp A.M, Fukuda M.M, Hien T.T, Mayxay M., Noedl H. et al..  2015.  Independent Emergence of Artemisinin Resistance Mutations Among Plasmodium falciparum in Southeast Asia. Journal of Infectious Diseases. 211:670-679.
Zwick A, Regier JC, Mitter C, Cummings MP.  2011.  Increased gene sampling yields robust support for higher‐level clades within Bombycoidea (Lepidoptera). Systematic EntomologySystematic Entomology. 36
Kawahara A.Y, Ohshima I., Kawakita A., Regier J.C, Mitter C., Cummings MP, Davis D.R, Wagner D.L, De Prinis J., Lopez-Vaamonde C..  2011.  Increased gene sampling provides stronger support for higher-level groups within gracillariid leaf mining moths and relatives (Lepidoptera: Gracillariidae). BMC Evol BiolBMC Evol Biol. 11:182
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al..  2003.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.. Nucleic Acids Res. 31(19):5654-66.
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al..  2003.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.. Nucleic Acids Res. 31(19):5654-66.
Seaver SMD, Bradbury LMT, Frelin O, Zarecki R, Ruppin E, Hanson AD, Henry CS.  2015.  Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm.. Front Plant Sci. 6:142.
Souza C.P, Almeida B.C, Colwell RR, Rivera I.NG.  2011.  The Importance of Chitin in the Marine Environment. Marine BiotechnologyMarine Biotechnology.
Treangen T, Ambur OHerman, Tonjum T, Rocha EPC.  2008.  The impact of the neisserial DNA uptake sequences on genome evolution and stability. Genome biology. 9:R60.
Liu B, Pop M..  2010.  Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. Bioinformatics Research and ApplicationsBioinformatics Research and Applications. 6053
Del Canto F., Botkin D.J, Valenzuela P., Popov V., Ruiz-Perez F., Nataro J.P, Levine M.M, Stine O.C, Pop M., Torres A.G et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunityInfection and immunity. 80
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Treangen T, Rocha E.  2011.  Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet. 7:e1001284.
Oberhardt MA, Zarecki R, Gronow S, Lang E, Klenk H-P, Gophna U, Ruppin E.  2015.  Harnessing the landscape of microbial culture media to predict new organism-media pairings.. Nat Commun. 6:8493.
Frezza C, Zheng L, Folger O, Rajagopalan KN, MacKenzie ED, Jerby L, Micaroni M, Chaneton B, Adam J, Hedley A et al..  2011.  Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.. Nature. 477(7363):225-8.
Frezza C, Zheng L, Folger O, Rajagopalan KN, MacKenzie ED, Jerby L, Micaroni M, Chaneton B, Adam J, Hedley A et al..  2011.  Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.. Nature. 477(7363):225-8.
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Shahri HHaidarian, Namata G, Navlakha S, Deshpande A, Roussopoulos N.  2007.  A graph-based approach to vehicle tracking in traffic camera video streams. Proceedings of the 4th workshop on Data management for sensor networks: in conjunction with 33rd International Conference on Very Large Data Bases.
Eilam O., Zarecki R., Oberhardt M., Ursell L.K, Kupiec M., Knight R., Gophna U., Ruppin E..  2014.  Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations. mBio. 5(4):e01526-14-e01526-14.
Tardito S, Oudin ïs, Ahmed SU, Fack F, Keunen O, Zheng L, Miletic H, Sakariassen Ø, Weinstock A, Wagner A et al..  2015.  Glutamine synthetase activity fuels nucleotide biosynthesis and supports growth of glutamine-restricted glioblastoma. Nature Cell Biology. 17(12):1556-1568.
Tardito S, Oudin ïs, Ahmed SU, Fack F, Keunen O, Zheng L, Miletic H, Sakariassen Ø, Weinstock A, Wagner A et al..  2015.  Glutamine synthetase activity fuels nucleotide biosynthesis and supports growth of glutamine-restricted glioblastoma. Nature Cell Biology. 17(12):1556-1568.
Zo Y.G, Rivera I.NG, Russek-Cohen E., Islam M.S, Siddique A.K, Yunus M., Sack R.B, Huq A., Colwell RR.  2002.  Genomic profiles of clinical and environmental isolates of Vibrio cholerae O1 in cholera-endemic areas of Bangladesh. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 99

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