Publications

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A
Yaklichkin SYu, Darnell DK, Pier MV, Antin PB, Hannenhalli S.  2011.  Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evolutionary BiologyBMC Evolutionary Biology. 11
Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M..  2011.  Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC GenomicsBMC Genomics. 12
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122.
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S.  2011.  Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.. Genome Biol. 12(12):R122.
Lin H.C, Goldstein S., Mendelowitz L., Zhou S., Wetzel J., Schwartz D.C, Pop M..  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformaticsBMC Bioinformatics. 13
Pop M, Touzet H.  2015.  Algorithms in Bioinformatics: 15th International Workshop, WABI 2015. Lecture Notes in Bioinformatics. :328.
Pop M, Touzet H.  2015.  Algorithms in Bioinformatics: 15th International Workshop, WABI 2015. Lecture Notes in Bioinformatics. :328.
White JR, Navlakha S, Nagarajan N, Ghodsi M-R, Kingsford C, Pop M..  2010.  Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC BioinformaticsBMC Bioinformatics. 11
Attardo GM, Strickler-Dinglasan P, Perkin SAH, Caler E, Bonaldo MF, Soares MB, El-Sayeed N, Aksoy S.  2006.  Analysis of fat body transcriptome from the adult tsetse fly, Glossina morsitans morsitans.. Insect Mol Biol. 15(4):411-24.
Darling AE, Treangen T, Messeguer X, Perna NT.  2007.  Analyzing patterns of microbial evolution using the mauve genome alignment system. Comparative Genomics. :135–152.
Haft DH, Payne SH, Selengut J..  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification. Journal of bacteriologyJournal of bacteriology. 194
Haft DH, Payne SH, Selengut JD.  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.. J Bacteriol. 194(1):36-48.
Liu B., Pop M..  2009.  ARDB--Antibiotic Resistance Genes Database. Nucleic Acids ResearchNucleic Acids Research. 37
Kingsford C, Schatz M., Pop M..  2010.  Assembly complexity of prokaryotic genomes using short reads. BMC bioinformaticsBMC Bioinformatics. 11
Wetzel J., Kingsford C, Pop M..  2011.  Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC bioinformaticsBMC Bioinformatics. 12
Koren S, Treangen T, Hill CM, Pop M, Phillippy AM.  2014.  Automated ensemble assembly and validation of microbial genomes.. BMC Bioinformatics. 15:126.
Koren S, Treangen T, Hill CM, Pop M, Phillippy AM.  2014.  Automated ensemble assembly and validation of microbial genomes.. BMC Bioinformatics. 15:126.
B
Koren S, Treangen T, Pop M..  2011.  Bambus 2: Scaffolding Metagenomes. Bioinformatics. 27
Ghurye J, Pop M.  2016.  Better Identification of Repeats in Metagenomic Scaffolding. 9838:174-184.
Pop M., Salzberg SL.  2008.  Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24
Gevers D, Pop M., Schloss PD, Huttenhower C.  2012.  Bioinformatics for the Human Microbiome Project. PLOS Computational BiologyPLOS Computational Biology. 8
C
Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S et al..  2011.  Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60
Almeida M, Pop M, Le Chatelier E, Prifti E, Pons N, Ghozlane A, S Ehrlich D.  2016.  Capturing the most wanted taxa through cross-sample correlations. The ISME Journal.
Almeida M, Pop M, Le Chatelier E, Prifti E, Pons N, Ghozlane A, S Ehrlich D.  2016.  Capturing the most wanted taxa through cross-sample correlations. The ISME Journal.
Almeida M, Pop M, Le Chatelier E, Prifti E, Pons N, Ghozlane A, S Ehrlich D.  2016.  Capturing the most wanted taxa through cross-sample correlations. The ISME Journal.

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