Publications
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2010. Broader incorporation of bioinformatics in education: opportunities and challenges. Brief BioinformBrief Bioinform. 11
2007. Bridging art and science with creativity support tools. Proceedings of the 6th ACM SIGCHI conference on Creativity & cognition.
2004. A book like its cover –- The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny, Edited by M. Salemi and A.-M. Vandamme. Heredity. 93:234-235.
2014. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.. Bioinformatics. 30(9):1214-9.
2007. Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences. Future Generation Comp SystFuture Generation Comp Syst. 23
2009. Biological agent detection technologies. Molecular Ecology ResourcesMolecular Ecology Resources. 9
2012. Bioinformatics for the Human Microbiome Project. PLOS Computational BiologyPLOS Computational Biology. 8
2008. Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24
2008. Biofilms in water, its role and impact in human disease transmission. Current Opinion in BiotechnologyCurrent Opinion in Biotechnology. 19
2007. Biased data reduce efficiency and effectiveness of conservation reserve networks. Ecology LettersEcology Letters. 10
2012. BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst BiolSystematic BiologySyst Biol. 61
2012. BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection.. Proc Natl Acad Sci U S A. 109(24):9575-80.
2012. BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
2012. BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
2015. Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6:8555.
2004. BAMBE, DnaSP, ENCprime/SeqCount, LAMARC, MacClade, MEGA, Modeltest, MrBayes, PAML, PAUP*, PHYLIP, r8s, readseq, Seq-Gen, Sites, TreeView. Dictionary of Bioinformatics. :39-40,123-124,146,288-289,305,318,337,352,388,392,398-399,455,457,502,522,568.
1999. Bacterial Start Site Prediction. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 27
2011. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 108