Publications
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Author [ Title] Type Year Filters: First Letter Of Last Name is O [Clear All Filters]
2015. Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation.. Nucleic Acids Res. 43(14):6799-813.
2016. Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection.. PLoS Pathog. 12(4):e1005511.
2005. Temperature-Driven Campylobacter Seasonality in England and Wales. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71
2016. Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.. PLoS Comput Biol. 12(1):e1004705.
2013. Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection. Journal of Clinical MicrobiologyJournal of Clinical Microbiology. 51
2015. Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions.. BMC Genomics. 16(1):1108.
2015. Shape analysis of high-throughput transcriptomics experiment data.. Biostatistics. 16(4):627-40.
1995. Sampling properties of DNA sequence data in phylogenetic analysis. Mol Biol EvolMol Biol Evol. 12
2009. Salient Frame Detection for Molecular Dynamics Simulations. Scientific VisualizationScientific Visualization.
2012. Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in MicrobiologyFront MicrobiolFrontiers in MicrobiologyFront Microbiol. 2
2013. Quantitative PCR for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate-to-Severe Diarrhea in Low-Income Countries. Journal of Clinical MicrobiologyJournal of Clinical Microbiology. 51
2005. Promoter architecture and response to a positive regulator of archaeal transcription. Molecular MicrobiologyMolecular Microbiology. 56
2003. Phylogenetic analysis reveals five independent transfers of the chloroplast gene ıt rbcL to the mitochondrial genome in angiosperms. Curr GenetCurr Genet. 43
1999. Penumbral tissue damage following acute stroke: a computational investigation. Progress in brain researchProgress in brain research. 121
1999. Pathogenic mechanisms in ischemic damage: a computational study. Computers in biology and medicineComputers in biology and medicine. 29
2014. A Novel Nutritional Predictor Links Microbial Fastidiousness with Lowered Ubiquity, Growth Rate, and Cooperativeness. PLoS Computational Biology. 10(7):e1003726.
2015. Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.
2015. Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.
2013. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome BiolGenome Biol. 14
2014. Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms. PLoS ONE. 9(5):e98372.