Publications
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2012. Temporal and Spatial Variability in the Distribution of Vibrio vulnificus in the Chesapeake Bay: A Hindcast Study. EcoHealthEcoHealth.
2012. Transcript expression analysis of putative Trypanosoma brucei GPI-anchored surface proteins during development in the tsetse and mammalian hosts.. PLoS Negl Trop Dis. 6(6):e1708.
2012. Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical MicrobiologyJ. Clin. Microbiol.Journal of Clinical MicrobiologyJ. Clin. Microbiol..
2012. We are what we eat: how the diet of infants affects their gut microbiome. Genome BiologyGenome Biology. 13
2012. Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity. PLoS neglected tropical diseasesPLoS neglected tropical diseases. 6
2012. Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.. PLoS Negl Trop Dis. 6(10):e1853.
2011. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evolutionary BiologyBMC Evolutionary Biology. 11
2011. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC GenomicsBMC Genomics. 12
2011. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122.
2011. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.. Genome Biol. 12(12):R122.
2011. Aquatic Realm and Cholera. Epidemiological and Molecular Aspects on CholeraEpidemiological and Molecular Aspects on Cholera.
2011. Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC bioinformaticsBMC Bioinformatics. 12
2011. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 108
2011. Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60
2011. Clonal transmission, dual peak, and off-season cholera in Bangladesh. Infection Ecology & EpidemiologyInfection Ecology & Epidemiology. 1
2011. Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths. Genome biology. 12:R51.
2011. A computational statistics approach for estimating the spatial range of morphogen gradients.. Development. 138(22):4867-74.
2011. A computational statistics approach for estimating the spatial range of morphogen gradients. Development. 138(22):4867-4874.
2011. Computing the Tree of Life: Leveraging the Power of Desktop and Service Grids. Parallel and Distributed Processing Workshops and Phd Forum (IPDPSW), 2011 IEEE International Symposium on.
2011. A cost-aggregating integer linear program for motif finding. Journal of Discrete AlgorithmsJournal of Discrete Algorithms. 9
2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17(9):1101-1108.
2011. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.. Nat Med. 17(9):1101-8.
2011. DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC BioinformaticsBMC Bioinformatics. 12