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2011
Patro R., Ip CYiu, Bista S., Cho S.S, Thirumalai D., Varshney A.  2011.  MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. Biological Data Visualization (BioVis), 2011 IEEE Symposium on.
Liu B, Pop M..  2011.  MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC ProceedingsBMC Proceedings. 5
Treangen T, Sommer D.D, Angly F.E, Koren S., Pop M..  2011.  Next Generation Sequence Assembly with AMOS. Current Protocols in BioinformaticsCurrent Protocols in Bioinformatics. 11
Maximo A., Patro R., Varshney A, Farias R..  2011.  A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing. Graphical ModelsGraphical Models. 73
Patro R., Ip CYiu, Bista S., Varshney A.  2011.  Social Snapshot: A System for Temporally Coupled Social Photography. Computer Graphics and Applications, IEEEComputer Graphics and Applications, IEEE. 31
Lopez J.V, Ledger A., Santiago-Vázquez L.Z, Pop M., Sommer D.D, Ranzer L.K, Feldman R.A, Russell G.K.  2011.  Suppression subtractive hybridization PCR isolation of cDNAs from a Caribbean soft coral. Electronic Journal of BiotechnologyElectronic Journal of Biotechnology. 14
2012
Lin H.C, Goldstein S., Mendelowitz L., Zhou S., Wetzel J., Schwartz D.C, Pop M..  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformaticsBMC Bioinformatics. 13
Haft DH, Payne SH, Selengut J..  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification. Journal of bacteriologyJournal of bacteriology. 194
Haft DH, Payne SH, Selengut JD.  2012.  Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.. J Bacteriol. 194(1):36-48.
Gevers D, Pop M., Schloss PD, Huttenhower C.  2012.  Bioinformatics for the Human Microbiome Project. PLOS Computational BiologyPLOS Computational Biology. 8
Ye C, Ma Z.S, Cannon C.H, Pop M., Yu D.W.  2012.  Exploiting sparseness in de novo genome assembly. BMC bioinformaticsBMC Bioinformatics. 13
Methé B.A, Nelson K.E, Pop M., Creasy H.H, Giglio M.G, Huttenhower C., Gevers D., Petrosino J.F, Abubucker S., Badger J.H et al..  2012.  A framework for human microbiome research. NatureNature. 486
Methé B.A, Nelson K.E, Pop M., Creasy H.H, Giglio M.G, Huttenhower C., Gevers D., Petrosino J.F, Abubucker S., Badger J.H et al..  2012.  A framework for human microbiome research. NatureNature. 486
Salzberg S.L, Phillippy A.M, Zimin A., Puiu D., Magoc T., Koren S., Treangen T, Schatz M.C, Delcher A.L, Roberts M. et al..  2012.  GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome researchGenome Research. 22
Salzberg S.L, Phillippy A.M, Zimin A., Puiu D., Magoc T., Koren S., Treangen T, Schatz M.C, Delcher A.L, Roberts M. et al..  2012.  GAGE: A critical evaluation of genome assemblies and assembly algorithms. Genome researchGenome Research. 22
Bravo HCorrada, Pihur V, McCall M, Irizarry RA, Leek JT.  2012.  Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC bioinformaticsBMC Bioinformatics. 13
Kelley DR, Liu B, Delcher AL, Pop M., Salzberg SL.  2012.  Gene Prediction with Glimmer for Metagenomic Sequences Augmented by Classification and Clustering. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 40
G. Christopher V, Lucia P, Jennifer H.KChoi, Mathieu W, Devan J, J. Pepe H, Jennifer B, Karuna M, J. Alan P, Hannenhalli S et al..  2012.  Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus. Physiological GenomicsPhysiological Genomics.
Del Canto F., Botkin D.J, Valenzuela P., Popov V., Ruiz-Perez F., Nataro J.P, Levine M.M, Stine O.C, Pop M., Torres A.G et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunityInfection and immunity. 80
Del Canto F., Botkin D.J, Valenzuela P., Popov V., Ruiz-Perez F., Nataro J.P, Levine M.M, Stine O.C, Pop M., Torres A.G et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunityInfection and immunity. 80
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40
Phillippy A, Treangen T.  2012.  Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone. Genome Biology. 13

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