Publications

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2006
Bringaud F, Ghedin E, Blandin G, Bartholomeu DC, Caler E, Levin MJ, Baltz T, El‐Sayed NM.  2006.  Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 145
Haft DH, Paulsen IT, Ward N, Selengut J..  2006.  Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. BMC biologyBMC biology. 4
Ross DA, Hannenhalli S, Tobias JW, Cooch N, Shiekhattar R, Kadesch T.  2006.  Functional Analysis of Hes-1 in Preadipocytes. Molecular EndocrinologyMolecular EndocrinologyMolecular EndocrinologyMolecular Endocrinology. 20
Balch T, Dellaert F, Feldman A, Guillory A, Isbell C, Khan Z, Stein A, Wilde H.  2006.  How A.I. and multi-robot systems research will accelerate our understanding of social animal behavior. Proceedings of the IEEE. 94(7):1445-1463.
Balch T., Dellaert F., Feldman A., Guillory A., Isbell C.L., Khan Z., Pratt S.C., Stein A.N., Wilde H..  2006.  How Multirobot Systems Research will Accelerate our Understanding of Social Animal Behavior. Proceedings of the IEEE. 94(7):1445-1463.
Hannenhalli S, Middleton R.P, Levy S., Perroud B., Holzwarth J.A, McDonald K., Hannah S.S,.  2006.  Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements. Osteoarthritis and cartilage/OARS, Osteoarthritis Research SocietyOsteoarthritis and cartilage/OARS, Osteoarthritis Research Society. 14
Wang L.S, Jensen S., Hannenhalli S.  2006.  An interaction-dependent model for transcription factor binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics.
Hannenhalli S.  2006.  Invited Talk: Deciphering Gene Regulatory Networks by in silico approaches. 6th International Workshop on Data Mining in Bioinformatics (BIOKDD06)6th International Workshop on Data Mining in Bioinformatics (BIOKDD06).
Wang J, Hannenhalli S.  2006.  A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research CommunicationsBiochemical and Biophysical Research Communications. 347
Khan Z, Balch T, Dellaert F.  2006.  MCMC data association and sparse factorization updating for real time multitarget tracking with merged and multiple measurements.. IEEE Trans Pattern Anal Mach Intell. 28(12):1960-72.
Khan Z, Balch T, Dellaert F.  2006.  MCMC Data Association and Sparse Factorization Updating for Real Time Multitarget Tracking with Merged and Multiple Measurements. IEEE Transactions on Pattern Analysis and Machine Intelligence. 28(12):1960-1972.
Gill SR, Pop M., DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE.  2006.  Metagenomic Analysis of the Human Distal Gut Microbiome. ScienceScienceScienceScience. 312
Treangen T, Messeguer X.  2006.  M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. BMC bioinformatics. 7:433.
Colwell RR.  2006.  Microbial diversity in the era of genomics. SYMPOSIA-SOCIETY FOR GENERAL MICROBIOLOGY. 66
Baida RCP, Santos MRM, Carmo MS, Yoshida N, Ferreira D, Ferreira ATeixeira, Sayed NMEl, Andersson B, da Silveira JFranco.  2006.  Molecular Characterization of Serine-, Alanine-, and Proline-Rich Proteins of Trypanosoma cruzi and Their Possible Role in Host Cell Infection. Infect. Immun.Infect. Immun.. 74
Khan Z., Balch T., Dellaert F..  2006.  Multitarget Tracking with Split and Merged Measurements. 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05)2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).
Belkin S, Colwell RR.  2006.  Oceans And Health: Pathogens In The Marine Environment.
Geisbrecht BV, Bouyain S, Pop M..  2006.  An optimized system for expression and purification of secreted bacterial proteins. Protein Expression and PurificationProtein Expression and Purification. 46
Hadley D., Murphy T., Valladares O., Hannenhalli S, Ungar L., Kim J., Bucan M.,.  2006.  Patterns of sequence conservation in presynaptic neural genes. Genome BiolGenome Biol. 7
Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT.  2006.  Procrastination leads to efficient filtration for local multiple alignment. International Workshop on Algorithms in Bioinformatics.
Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT.  2006.  Procrastination Leads to Efficient Filtration for Local Multiple Alignment. 4175:126-137.
Hinsch H, Hannenhalli S.  2006.  Recurring genomic breaks in independent lineages support genomic fragility. BMC Evolutionary BiologyBMC Evolutionary Biology. 6
Lewinski M.K, Yamashita M., Emerman M., Ciuffi A., Marshall H., Crawford G., Collins F., Shinn P., Leipzig J., Hannenhalli S et al..  2006.  Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS pathogensPLoS pathogens. 2
Wu W, Niles EG, El‐Sayed NM, Berriman M, LoVerde PT.  2006.  Schistosoma mansoni (Platyhelminthes, Trematoda) nuclear receptors: Sixteen new members and a novel subfamily. GeneGene. 366
Alam M, Hasan NA, Sadique A, Bhuiyan N.A, Ahmed KU, Nusrin S, G. Nair B, Siddique A.K, R. Sack B, Sack DA et al..  2006.  Seasonal Cholera Caused by Vibrio Cholerae Serogroups O1 and O139 in the Coastal Aquatic Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72

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