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Hannenhalli S, Pevzner P.A.  1995.  Reversals do not cut long strips.
Cummings MP.  1991.  Review of Fundamentals of Molecular Evolution, by Li. W.-H. and D. Graur. CladisticsCladistics. 7
Peculis BA, Mount SM.  1996.  Ribosomal RNA: small nucleolar RNAs make their mark.. Curr Biol. 6(11):1413-5.
Grim CJ, Zo Y-G, Hasan NA, Ali A, Chowdhury WB, Islam A, Rashid MH, Alam M, J. Morris G, Huq A et al..  2009.  RNA Colony Blot Hybridization Method for Enumeration of Culturable Vibrio Cholerae and Vibrio Mimicus Bacteria. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
Mount SM.  1983.  RNA processing. Sequences that signal where to splice.. Nature. 304(5924):309-10.
Liu Y, Morley M, Brandimarto J, Hannenhalli S, Hu Y, Ashley EA, Tang WHWilson, Moravec CS, Margulies KB, Cappola TP et al..  2015.  RNA-Seq identifies novel myocardial gene expression signatures of heart failure.. Genomics. 105(2):83-9.
Akula N, Barb J, Jiang X, Wendland JR, Choi KH, Sen SK, Hou L, Chen DTW, Laje G, Johnson K et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.. Mol Psychiatry. 19(11):1179-85.
Akula N., Barb J., Jiang X., Wendland J.R, Choi K.H, Sen S.K, Hou L., Chen D.TW, Laje G., Johnson K. et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder. Molecular psychiatry.
Maximo A., Patro R., Varshney A, Farias R..  2011.  A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing. Graphical ModelsGraphical Models. 73
Chung M, Krueger J, Pop M.  2015.  Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities. arXiv preprint arXiv:1509.06926.
Nahar S, Sultana M, M. Naser N, Nair GB, Watanabe H, Ohnishi M, Yamamoto S, Endtz H, Cravioto A, R. Sack B et al..  2012.  Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in MicrobiologyFront MicrobiolFrontiers in MicrobiologyFront Microbiol. 2
Mokryn O, Wagner A, Blattner M, Ruppin E, Shavitt Y.  2016.  The Role of Temporal Trends in Growing Networks.. PLoS One. 11(8):e0156505.
Bringaud F, Ghedin E, El‐Sayed NM, Papadopoulou B.  2008.  Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10
De Magny GConstantin, Mozumder PK, Grim CJ, Hasan NA, M. Naser N, Alam M, R. Sack B, Huq A, Colwell RR.  2011.  Role of Zooplankton Diversity in Vibrio Cholerae Population Dynamics and in the Incidence of Cholera in the Bangladesh Sundarbans. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 77
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Patro R, Mount SM, Kingsford C.  2014.  Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.. Nat Biotechnol. 32(5):462-4.
Patro R., Ip C.Y, Varshney A, Hagen H..  2010.  Saliency Guided Summarization of Molecular Dynamics Simulations. Scientific Visualization: Advanced ConceptsScientific Visualization: Advanced Concepts. 1
Kim Y, Patro R, Ip CYiu, O'Leary DP, Anishkin A, Sukharev S, Varshney A.  2009.  Salient Frame Detection for Molecular Dynamics Simulations. Scientific VisualizationScientific Visualization.
Cummings MP, Otto S.P, Wakeley J..  1995.  Sampling properties of DNA sequence data in phylogenetic analysis. Mol Biol EvolMol Biol Evol. 12
King L.M, Cummings MP.  1997.  Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol EvolMol Biol Evol. 14
Nagarajan N, Read TD, Pop M..  2008.  Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24
Ghurye J, Pop M, Koren S, Chin C-S.  2016.  Scaffolding of long read assemblies using long range contact information.
Haas BJ, Berriman M, Hirai H, Cerqueira GG, LoVerde PT, El‐Sayed NM.  2007.  Schistosoma mansoni genome: Closing in on a final gene set. Experimental ParasitologyExperimental Parasitology. 117
LoVerde PT, Hirai H, Merrick JM, Lee NH, El‐Sayed NM.  2004.  Schistosoma mansoni genome project: an update. Parasitology InternationalParasitology International. 53
Waisberg M, Lobo FP, Cerqueira GC, Passos LKJ, Carvalho OS, El-Sayed NM, Franco GR.  2008.  Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.. Exp Parasitol. 120(4):357-63.
Wu W, Niles EG, El‐Sayed NM, Berriman M, LoVerde PT.  2006.  Schistosoma mansoni (Platyhelminthes, Trematoda) nuclear receptors: Sixteen new members and a novel subfamily. GeneGene. 366

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