Publications
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1994. Transmission patterns of eukaryotic transposable elements - arguments for and against horizontal transfer. Trends Ecol EvolTrends Ecol Evol. 9
2007. TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic acids researchNucleic Acids Research. 35
1998. Trends in the early careers of life scientists - Preface and executive summary. Mol Biol CellMol Biol Cell. 9
2006. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.. Mol Biol Evol. 23(2):411-20.
2006. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23
2006. Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region.. BMC Genomics. 7:60.
2006. Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC GenomicsBMC Genomics. 7
2002. Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression. Experimental ParasitologyExperimental Parasitology. 102
2002. Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression.. Exp Parasitol. 102(3-4):123-33.
2008. A Tutorial of the Poisson Random Field Model in Population Genetics. Advances in BioinformaticsAdvances in Bioinformatics. 2008
2009. Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.. Plant Physiol. 150(3):1450-8.
1983. The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro.. Cell. 33(2):509-18.
2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome BiologyGenome Biology. 10
2007. Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 9
2010. Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria. Journal of bacteriologyJournal of bacteriology. 192
2010. Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria.. J Bacteriol. 192(21):5788-98.
2007. A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes. Molecular biology and evolutionMolecular biology and evolution. 24
1995. Unsupervised learning of disambiguation rules for part of speech tagging. Proceedings of the third workshop on very large corporaProceedings of the third workshop on very large corpora. 30
2015. Use and mis-use of supplementary material in science publications. BMC Bioinformatics. 1632733845166(1)
2009. Using Satellite Images of Environmental Changes to Predict Infectious Disease Outbreaks. Emerging Infectious DiseasesEmerg Infect DisEmerging Infectious DiseasesEmerg Infect Dis. 15
2004. Using the TIGR assembler in shotgun sequencing projects. METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-METHODS IN MOLECULAR BIOLOGY-CLIFTON THEN TOTOWA-. 255
2010. Validating the systematic position of ıt Plationus Segers, Murugan & Dumont, 1993 (Rotifera: Brachionidae) using sequences of the large subunit of the nuclear ribosomal DNA and of cytochrome C oxidase. HydrobiologiaHydrobiologia. 644
2004. Variation of toxigenic Vibrio cholerae O1 in the aquatic environment of Bangladesh and its correlation with the clinical strains. Microbiology and immunologyMicrobiology and Immunology. 48
2007. Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. VirologyVirology. 365
2007. Viable but nonculturable Vibrio cholerae O1 in biofilms in the aquatic environment and their role in cholera transmission. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 104