Publications
2005. A framework for set-oriented computation in inductive logic programming and its application in generalizing inverse entailment. Inductive Logic ProgrammingInductive Logic Programming.
2010. Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data. Biometrics. 66(3):665-674.
2009. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. J Mach Learn Res. 5:41-48.
2010. Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae. BMC MicrobiologyBMC Microbiology. 10
1994. A SIMD solution to the sequence comparison problem on the MGAP. International Conference on Application Specific Array Processors, 1994. Proceedings.
2005. Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non-lethal cold shock.. Environ Microbiol. 7(6):789-97.
2005. Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental MicrobiologyEnvironmental Microbiology. 7
2013. A decision-theory approach to interpretable set analysis for high-dimensional data. BiometricsBiometrics. 69
2009. Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):221.
2009. Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.
2012. Global secretome analysis identifies novel mediators of bone metastasis.. Cell Res. 22(9):1339-55.
2012. Global secretome analysis identifies novel mediators of bone metastasis. Cell Research. 22(9):1339-1355.
1996. Evolutionary biology of parasitic platyhelminths: The role of molecular phylogenetics. Parasitol TodayParasitol Today. 12
2013. Genome sequencing of four strains of Rickettsia prowazekii, the causative agent of epidemic typhus, including one flying squirrel isolate. Genome announcementsGenome announcements. 1
2004. Viable but Nonculturable Vibrio Cholerae O1 in the Aquatic Environment of Argentina. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 70
2006. Selection of Target Sites for Mobile DNA Integration in the Human Genome. PLoS Comput BiolPLoS Comput BiolPLoS Comput BiolPLoS Comput Biol. 2
1983. Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites.. Cell. 32(2):461-72.
2002. 1.375-approximation algorithm for sorting by reversals. Algorithms—ESA 2002Algorithms—ESA 2002.
1994. Identification of the calcium-binding protein calgranulin in the matrix of struvite stones. Journal of endourology / Endourological SocietyJournal of endourology / Endourological Society. 8