Publications
1996. Evolutionary biology of parasitic platyhelminths: The role of molecular phylogenetics. Parasitol TodayParasitol Today. 12
2015. Evolutionarily conserved network properties of intrinsically disordered proteins.. PLoS One. 10(5):e0126729.
2006. Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 145
2009. The evolution of Fox genes and their role in development and disease. Nature reviews. GeneticsNat Rev GenetNature reviews. GeneticsNat Rev Genet. 10
2009. Evidence for Coregulation of Myocardial Gene Expression by MEF2 and NFAT in Human Heart FailureCLINICAL PERSPECTIVE. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 2
2014. An evaluation of Monte-Carlo logic and logicFS motivated by a study of the regulation of gene expression in heart failure. Journal of Applied Statistics. 41(9):1956-1975.
2015. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.. BMC Bioinformatics. 16:218.
2007. Eukaryotic Transcriptional Regulation: Signals, Interactions, and Modules. Computational Genomics: Current MethodsComputational Genomics: Current Methods.
2008. Eukaryotic Transcription Factor Binding Sites—modeling and Integrative Search Methods. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24
2009. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. J Mach Learn Res. 5:41-48.
2015. Essential Genes in the Core Genome of the Human Pathogen Streptococcus pyogenes.. Sci Rep. 5:9838.
2014. Epiviz: interactive visual analytics for functional genomics data.. Nat Methods. 11(9):938-40.
2015. Epiviz: a view inside the design of an integrated visual analysis software for genomics. BMC Bioinformatics. 16(Suppl 11):S4.
2012. Epigenomic model of cardiac enhancers with application to Genome wideassociation studies. Pacific Symposium on BiocomputingPacific Symposium on Biocomputing.
2008. Environmental Vibrio spp., isolated in Mozambique, contain a polymorphic group of integrative conjugative elements and class 1 integrons. FEMS Microbiology EcologyFEMS Microbiology Ecology. 64
2008. Environmental signatures associated with cholera epidemics. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 105
2010. Environmental reservoirs of Vibrio cholerae and their role in cholera. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
2001. Enrichment of Regulatory Signals in Conserved Non-Coding Genomic Sequence. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 17