Publications
2010. Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data. Biometrics. 66(3):665-674.
2012. Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC bioinformaticsBMC Bioinformatics. 13
2007. Optimizing mpf queries. Proceedings of the 2007 ACM SIGMOD international conference on Management of data - SIGMOD '07.
2009. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming. J Mach Learn Res. 5:41-48.
1995. Unsupervised learning of disambiguation rules for part of speech tagging. Proceedings of the third workshop on very large corporaProceedings of the third workshop on very large corpora. 30
2002. Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi.. Mol Biochem Parasitol. 124(1-2):73-8.
2006. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.. Mol Biol Evol. 23(2):411-20.
2004. The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei.. Mol Biol Evol. 21(3):520-8.
2007. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307.
2008. Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10
2006. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23
2002. A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei.. Eukaryot Cell. 1(1):137-51.
2006. Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 145
2004. The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Molecular biology and evolutionMolecular biology and evolution. 21
2002. A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. Eukaryotic cellEukaryotic Cell. 1
2002. Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 124
2015. Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. Infection, Genetics and Evolution. 30:318-322.
2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 100
2005. Genome-wide analysis of retroviral DNA integration. Nat Rev MicroNat Rev MicroNat Rev MicroNat Rev Micro. 3
2010. Serodiversity and ecological distribution of Vibrio parahaemolyticus in the Venetian Lagoon, Northeast Italy. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
2010. Effect on Human Cells of Environmental Vibrio Parahaemolyticus Strains Carrying Type III Secretion System 2. Infection and ImmunityInfect. Immun.Infection and ImmunityInfect. Immun.. 78
2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.. BMC Genomics. 7:327.
1998. Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. Mol Phylogenet EvolMol Phylogenet Evol. 10