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Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut J., Koo HL et al.. 2002. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. NatureNature. 419

Carl JTrgovcich, Hannenhalli S. 2012. Widespread evidence of viral miRNAs targeting host pathways. BMC GenomicsBMC Genomics.

Campos A., Cummings MP, Reyes J.L, Laclette J.P. 1998. Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. Mol Phylogenet EvolMol Phylogenet Evol. 10

Campbell MA, Haas BJ, Hamilton JP, Mount SM, C Buell R. 2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.. BMC Genomics. 7:327.

Caburlotto G, Haley BJ, Lleò MM, Huq A, Colwell RR. 2010. Serodiversity and ecological distribution of Vibrio parahaemolyticus in the Venetian Lagoon, Northeast Italy. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2

Caburlotto G, Lleò MM, Hilton T, Huq A, Colwell RR, Kaper JB. 2010. Effect on Human Cells of Environmental Vibrio Parahaemolyticus Strains Carrying Type III Secretion System 2. Infection and ImmunityInfect. Immun.Infection and ImmunityInfect. Immun.. 78

B

Bushman F, Lewinski M, Ciuffi A, Barr S, Leipzig J, Hannenhalli S, Hoffmann C. 2005. Genome-wide analysis of retroviral DNA integration. Nat Rev MicroNat Rev MicroNat Rev MicroNat Rev Micro. 3

C. Buell R, Joardar V, Lindeberg M, Selengut J., Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, A. Durkin S, Kolonay JF et al.. 2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 100

Brown TS, Jacob CG, Silva JC, Takala-Harrison S, Djimdé A, Dondorp AM, Fukuda M, Noedl H, Nyunt MMyaing, Kyaw MPhone et al.. 2015. Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. Infection, Genetics and Evolution. 30:318-322.

Bringaud F, García-Pérez JLuis, Heras SR, Ghedin E, El‐Sayed NM, Andersson B, Baltz T, Lopez MC. 2002. Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 124

Bringaud F., Biteau N., Melville S.E, Hez S., El‐Sayed NM, Leech V., Berriman M., Hall N., Donelson J.E, Baltz T.. 2002. A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei. Eukaryotic cellEukaryotic Cell. 1

Bringaud F, García-Pérez JLuis, Heras SR, Ghedin E, El-Sayed NM, Andersson B, Baltz T, Lopez MC. 2002. Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi.. Mol Biochem Parasitol. 124(1-2):73-8.

Bringaud F, Bartholomeu DC, Blandin G, Delcher A, Baltz T, el-Sayed NMA, Ghedin E. 2006. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.. Mol Biol Evol. 23(2):411-20.

Bringaud F, Biteau N, Zuiderwijk E, Berriman M, El-Sayed NM, Ghedin E, Melville SE, Hall N, Baltz T. 2004. The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei.. Mol Biol Evol. 21(3):520-8.

Bringaud F, Müller M, Cerqueira GCoutinho, Smith M, Rochette A, el-Sayed NMA, Papadopoulou B, Ghedin E. 2007. Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307.

Bringaud F, Ghedin E, El‐Sayed NM, Papadopoulou B. 2008. Role of transposable elements in trypanosomatids. Microbes and InfectionMicrobes and Infection. 10

Bringaud F., Bartholomeu D.C, Blandin G., Delcher A., Baltz T., El‐Sayed NM, Ghedin E.. 2006. The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolutionMolecular biology and evolution. 23

Bringaud F, Biteau N, Melville SE, Hez S, El-Sayed NM, Leech V, Berriman M, Hall N, Donelson JE, Baltz T. 2002. A new, expressed multigene family containing a hot spot for insertion of retroelements is associated with polymorphic subtelomeric regions of Trypanosoma brucei.. Eukaryot Cell. 1(1):137-51.

Bringaud F, Ghedin E, Blandin G, Bartholomeu DC, Caler E, Levin MJ, Baltz T, El‐Sayed NM. 2006. Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 145

Bringaud F., Biteau N., Zuiderwijk E., Berriman M., El‐Sayed NM, Ghedin E., Melville S.E, Hall N., Baltz T.. 2004. The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Molecular biology and evolutionMolecular biology and evolution. 21

Brill E., Pop M.. 1995. Unsupervised learning of disambiguation rules for part of speech tagging. Proceedings of the third workshop on very large corporaProceedings of the third workshop on very large corpora. 30

Brettin TS, Bruce DC, Challacombe JF, Detter JC, Han CS, Munik A.C, Chertkov O, Meincke L, Saunders E, Choi SY et al.. 2009. Genome assortment, not serogroup, defines Vibrio cholerae pandemic strains. NatureNature.

Bravo HCorrada, Page D., Ramakrishnan R., Shavlik J., Costa V.S. 2005. A framework for set-oriented computation in inductive logic programming and its application in generalizing inverse entailment. Inductive Logic ProgrammingInductive Logic Programming.

Bravo HCorrada, Irizarry RA. 2010. Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data. Biometrics. 66(3):665-674.

Bravo HCorrada, Eng K.H, Keles S., Wahba G., Wright S.. 2008. Estimating Tree-Structured Covariance Matrices via Mixed-Integer Programming with an Application to Phylogenetic Analysis of Gene Expression. 1142

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