Publications
2015. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.. BMC Bioinformatics. 16:218.
2008. Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics (WABI'07). IEEE/ACM Transactions on Computational Biology and BioinformaticsIEEE/ACM Transactions on Computational Biology and Bioinformatics.
2011. DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC BioinformaticsBMC Bioinformatics. 12
2009. Inexact Local Alignment Search over Suffix Arrays. IEEE International Conference on Bioinformatics and Biomedicine, 2009. BIBM '09.
2004. Gene synteny and evolution of genome architecture in trypanosomatids.. Mol Biochem Parasitol. 134(2):183-91.
2012. Bioinformatics for the Human Microbiome Project. PLOS Computational BiologyPLOS Computational Biology. 8
2006. An optimized system for expression and purification of secreted bacterial proteins. Protein Expression and PurificationProtein Expression and Purification. 46
2000. Phylogenetic relationships of Acanthocephala based on analysis of 18S ribosomal RNA gene sequences. J Mol EvolJ Mol Evol. 50
2002. Phylogenetic analysis based on 18S ribosomal RNA gene sequences supports the existence of class Polyacanthocephala (Acanthocephala). Mol Phylogenet EvolMol Phylogenet Evol. 23
2011. Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.. Nature. 477(7363):225-8.
2000. Phylogenetic relationships of ıt Phytophthora species based on ribosomal ITS I DNA sequence analysis with emphasis on Waterhouse groups V and VI. Mycol ResMycol Res. 104
2009. Using Satellite Images of Environmental Changes to Predict Infectious Disease Outbreaks. Emerging Infectious DiseasesEmerg Infect DisEmerging Infectious DiseasesEmerg Infect Dis. 15
2011. Predicting selective drug targets in cancer through metabolic networks.. Mol Syst Biol. 7:501.
2015. The generation of macrophages with anti-inflammatory activity in the absence of STAT6 signaling.. J Leukoc Biol. 98(3):395-407.
2011. Vibrio Cholerae O1 Detection in Estuarine and Coastal Zooplankton. Journal of Plankton ResearchJ. Plankton Res.Journal of Plankton ResearchJ. Plankton Res.. 33
2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26