Publications
2008. The minimum information about a genome sequence (MIGS) specification. Nature biotechnologyNature biotechnology. 26
2016. Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures. mBio. 7(3):e00027-16.
2008. Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. Circulation: Cardiovascular GeneticsCirculation: Cardiovascular Genetics. 1
2003. Emergence and Evolution of Vibrio Cholerae O139. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
2003. Pathogenic Potential of Environmental Vibrio Cholerae Strains Carrying Genetic Variants of the Toxin-Coregulated Pilus Pathogenicity Island. Infection and ImmunityInfect. Immun.Infection and ImmunityInfect. Immun.. 71
2011. Transcriptional Regulation Via TF-Modifying Enzymes: An Integrative Model-Based Analysis. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 39
2010. Regulating the regulators: modulators of transcription factor activity. Methods Mol. BiolMethods Mol. Biol. 674
2006. Dense Subgraph Computation Via Stochastic Search: Application to Detect Transcriptional Modules. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 22
2009. PTM-Switchboard—a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic acids researchNucleic Acids Research. 37
2006. Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205
2009. CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome BiologyGenome Biology. 10
2008. Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3
2004. Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 6
2011. Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths. Genome biology. 12:R51.
2009. A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolutionMolecular biology and evolution. 26
2005. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. ScienceScience. 309
1995. cDNA expressed sequence tags of Trypanosoma brucei rhodesiense provide new insights into the biology of the parasite. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 73
1997. A survey of the Trypanosoma brucei rhodesiense genome using shotgun sequencing. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 84
2003. The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids researchNucleic Acids Research. 31
1997. African trypanosomes have differentially expressed genes encoding homologues of the Leishmania GP63 surface protease. Journal of Biological ChemistryJournal of Biological Chemistry. 272
1995. Crystallization and preliminary X-ray investigation of the recombinant Trypanosoma brucei rhodesiense calmodulin. Proteins: Structure, Function, and BioinformaticsProteins: Structure, Function, and Bioinformatics. 21
2000. The African trypanosome genome. International Journal for ParasitologyInternational Journal for Parasitology. 30
1997. Sequencing and mapping the African trypanosome genome. Trypanosomiasis and Leishmaniasis: Biology and Control . :51-63.