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Author Title [ Type(Asc)] Year
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Reports
Sharmin M, Bravo HCorrada, Hannenhalli SS.  2015.  Heterogeneity of Transcription Factor binding specificity models within and across cell lines.
Journal Articles
Treangen T, Rocha E.  2011.  Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PLoS Genet. 7:e1001284.
Trivedi CM, Zhu W, Wang Q, Jia C, Kee HJin, Li L, Hannenhalli S, Epstein JA.  2010.  Hopx and Hdac2 Interact to Modulate Gata4 Acetylation and Embryonic Cardiac Myocyte Proliferation. Developmental CellDevelopmental Cell. 19
Schatz MC, Trapnell C, Delcher AL, Varshney A.  2007.  High-throughput sequence alignment using Graphics Processing Units. BMC BioinformaticsBMC Bioinformatics. 8
Sarda, ii S, Hannenhalli S.  2015.  High throughput identification of cis-regulatory rewiring events in yeast.. Mol Biol Evol.
Pop M., Kosack DS, Salzberg SL.  2004.  Hierarchical Scaffolding With Bambus. Genome ResearchGenome Research. 14
Sharmin M, Bravo éctorCorrada, Hannenhalli S.  2016.  Heterogeneity of transcription factor binding specificity models within and across cell lines. Genome Research. :gr.199166.115.
Schatz MC, Phillippy AM, Sommer DD, Delcher AL, Puiu D, Narzisi G, Salzberg SL, Pop M..  2013.  Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings in bioinformaticsBriefings in bioinformatics. 14
Schatz MC, Phillippy AM, Shneiderman B, Salzberg SL.  2007.  Hawkeye: an interactive visual analytics tool for genome assemblies. Genome BiologyGenome Biology. 8
Treangen T, Ondov BD, Koren S, Phillippy AM.  2014.  The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes. Genome biology. 15:524.
Oberhardt MA, Zarecki R, Gronow S, Lang E, Klenk H-P, Gophna U, Ruppin E.  2015.  Harnessing the landscape of microbial culture media to predict new organism-media pairings.. Nat Commun. 6:8493.
DanČÍK V., Hannenhalli S, Muthukrishnan S..  1997.  Hardness of flip-cut problems from optical mapping. Journal of Computational BiologyJournal of Computational Biology. 4
Frezza C, Zheng L, Folger O, Rajagopalan KN, MacKenzie ED, Jerby L, Micaroni M, Chaneton B, Adam J, Hedley A et al..  2011.  Haem oxygenase is synthetically lethal with the tumour suppressor fumarate hydratase.. Nature. 477(7363):225-8.
Journal Article
Balch T., Dellaert F., Feldman A., Guillory A., Isbell C.L., Khan Z., Pratt S.C., Stein A.N., Wilde H..  2006.  How Multirobot Systems Research will Accelerate our Understanding of Social Animal Behavior. Proceedings of the IEEE. 94(7):1445-1463.
Balch T, Dellaert F, Feldman A, Guillory A, Isbell C, Khan Z, Stein A, Wilde H.  2006.  How A.I. and multi-robot systems research will accelerate our understanding of social animal behavior. Proceedings of the IEEE. 94(7):1445-1463.

Publications