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Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, A. Munk C, Tapia R, Green L et al..  2011.  Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME JournalThe ISME journal. 6
Kim D, Chiurillo MAngel, El-Sayed N, Jones K, Santos MRM, Porcile PE, Andersson B, Myler P, da Silveira JFranco, Ramírez JLuis.  2005.  Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres.. Gene. 346:153-61.
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.  2016.  System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84.
Megchelenbrink W, Katzir R, Lu X, Ruppin E, Notebaart RA.  2015.  Synthetic dosage lethality in the human metabolic network is highly predictive of tumor growth and cancer patient survival.. Proc Natl Acad Sci U S A.
Kingsford C, Marçais G..  2009.  A synthesis for exactly 3-edge-connected graphs. Arxiv preprint arXiv:0905.1053Arxiv preprint arXiv:0905.1053.
Konieczny A., Voytas D.F, Cummings MP, Ausubel F.M.  1991.  A superfamily of ıt Arabidopsis thaliana retrotransposons. GeneticsGenetics. 127
Huttenhower C., Gevers D., Knight R., Abubucker S., Badger J.H, Chinwalla A.T, Creasy H.H, Earl A.M, Fitzgerald M.G, Fulton R.S et al..  2012.  Structure, function and diversity of the healthy human microbiome. NatureNature. 486
Voytas D.F, Konieczny A., Cummings MP, Ausubel F.M.  1990.  The structure, distribution and evolution of the ıt Ta1 retrotransposable element family of ıt Arabidopsis thaliana. GeneticsGenetics. 126
Steitz JA, Berg C, Gottlieb E, Hardin JA, Hashimoto C, Hendrick JP, Hinterberger M, Krikeles M, Lerner MR, Mount SM.  1982.  Structure and function of small ribonucleoproteins from eukaryotic cells.. Princess Takamatsu Symp. 12:101-7.
Nierman WC, DeShazer D, H. Kim S, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC et al..  2004.  Structural flexibility in the Burkholderia mallei genome. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101
Nierman WC, DeShazer D, H. Kim S, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC et al..  2004.  Structural flexibility in the Burkholderia mallei genome. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101
Nierman WC, DeShazer D, H. Kim S, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC et al..  2004.  Structural flexibility in the Burkholderia mallei genome. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101
Baeza J, Dowell JA, Smallegan MJ, Fan J, Amador-Noguez D, Khan Z, Denu JM.  2014.  Stoichiometry of site-specific lysine acetylation in an entire proteome.. J Biol Chem. 289(31):21326-38.
Molden RC, Goya J, Khan Z, Garcia BA.  2014.  Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination.. Mol Cell Proteomics. 13(4):1106-18.
Cummings MP, King L.M, Kellogg E.A.  1994.  Slipped-strand mispairing in a plastid gene: ıt rpoC2 in grasses (Poaceae). Mol Biol EvolMol Biol Evol. 11
Cummings MP, King L.M, Kellogg E.A.  1994.  Slipped-strand mispairing in a plastid gene: ıt rpoC2 in grasses (Poaceae). Mol Biol EvolMol Biol Evol. 11
Alam M, Chowdhury WB, Bhuiyan N.A, Islam A, Hasan NA, G. Nair B, Watanabe H., Siddique A.K, Huq A, R. Sack B et al..  2009.  Serogroup, Virulence, and Genetic Traits of Vibrio Parahaemolyticus in the Estuarine Ecosystem of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 75
el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.
el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.
el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al..  2003.  The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.
Chazelle B., Kingsford C, Singh M..  2004.  A semidefinite programming approach to side chain positioning with new rounding strategies. INFORMS Journal on ComputingINFORMS Journal on Computing. 16
King L.M, Cummings MP.  1997.  Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol EvolMol Biol Evol. 14
Chung M, Krueger J, Pop M.  2015.  Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities. arXiv preprint arXiv:1509.06926.
Akula N., Barb J., Jiang X., Wendland J.R, Choi K.H, Sen S.K, Hou L., Chen D.TW, Laje G., Johnson K. et al..  2014.  RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder. Molecular psychiatry.
Navlakha S., Schatz M.C, Kingsford C.  2009.  Revealing biological modules via graph summarization. Journal of Computational BiologyJournal of Computational Biology. 16

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