Publications

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Journal Articles
Cunningham CE, Li S, Vizeacoumar FS, Bhanumathy KKalyanasun, Lee JSang, Parameswaran S, Furber L, Abuhussein O, Paul JM, McDonald M et al..  2016.  Therapeutic relevance of the protein phosphatase 2A in cancer. Oncotarget.com.
Arkin EM, Belleville P, Mitchell JSB, Mount D, Romanik K, Salzberg S, Souvaine D.  1997.  Testing simple polygons. Computational GeometryComputational Geometry. 8
Louis VR, Gillespie IA, O'Brien SJ, Russek-Cohen E, Pearson AD, Colwell RR.  2005.  Temperature-Driven Campylobacter Seasonality in England and Wales. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71
Kim D, Chiurillo MAngel, El-Sayed N, Jones K, Santos MRM, Porcile PE, Andersson B, Myler P, da Silveira JFranco, Ramírez JLuis.  2005.  Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres.. Gene. 346:153-61.
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.  2016.  System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84.
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.  2016.  System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84.
Oberhardt MA, Zarecki R, Reshef L, Xia F, Duran-Frigola M, Schreiber R, Henry CS, Ben-Tal N, Dwyer DJ, Gophna U et al..  2016.  Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.. PLoS Comput Biol. 12(1):e1004705.
Oberhardt MA, Zarecki R, Reshef L, Xia F, Duran-Frigola M, Schreiber R, Henry CS, Ben-Tal N, Dwyer DJ, Gophna U et al..  2016.  Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.. PLoS Comput Biol. 12(1):e1004705.
Megchelenbrink W, Katzir R, Lu X, Ruppin E, Notebaart RA.  2015.  Synthetic dosage lethality in the human metabolic network is highly predictive of tumor growth and cancer patient survival.. Proc Natl Acad Sci U S A.
Lo PC, Roy D, Mount SM.  1994.  Suppressor U1 snRNAs in Drosophila.. Genetics. 138(2):365-78.
Lopez J.V, Ledger A., Santiago-Vázquez L.Z, Pop M., Sommer D.D, Ranzer L.K, Feldman R.A, Russell G.K.  2011.  Suppression subtractive hybridization PCR isolation of cDNAs from a Caribbean soft coral. Electronic Journal of BiotechnologyElectronic Journal of Biotechnology. 14
Lopez J.V, Ledger A., Santiago-Vázquez L.Z, Pop M., Sommer D.D, Ranzer L.K, Feldman R.A, Russell G.K.  2011.  Suppression subtractive hybridization PCR isolation of cDNAs from a Caribbean soft coral. Electronic Journal of BiotechnologyElectronic Journal of Biotechnology. 14
Nierman WC, DeShazer D, H. Kim S, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC et al..  2004.  Structural flexibility in the Burkholderia mallei genome. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101
Nierman WC, DeShazer D, H. Kim S, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC et al..  2004.  Structural flexibility in the Burkholderia mallei genome. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101
Nierman WC, DeShazer D, H. Kim S, Tettelin H, Nelson KE, Feldblyum T, Ulrich RL, Ronning CM, Brinkac LM, Daugherty SC et al..  2004.  Structural flexibility in the Burkholderia mallei genome. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101
Revett K., Ruppin E., Goodall S., Reggia JA.  1998.  Spreading depression in focal ischemia: A computational study. Journal of Cerebral Blood Flow & MetabolismJournal of Cerebral Blood Flow & Metabolism. 18
Revett K., Ruppin E., Goodall S., Reggia JA.  1998.  Spreading depression in focal ischemia: A computational study. Journal of Cerebral Blood Flow & MetabolismJournal of Cerebral Blood Flow & Metabolism. 18
Revett K., Ruppin E., Goodall S., Reggia JA.  1998.  Spreading depression in focal ischemia: A computational study. Journal of Cerebral Blood Flow & MetabolismJournal of Cerebral Blood Flow & Metabolism. 18
Steitz JA, Wolin SL, Rinke J, Pettersson I, Mount SM, Lerner EA, Hinterberger M, Gottlieb E.  1983.  Small ribonucleoproteins from eukaryotes: structures and roles in RNA biogenesis.. Cold Spring Harb Symp Quant Biol. 47 Pt 2:893-900.
Selengut J., Rusch DB, Haft DH.  2010.  Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function. BMC bioinformaticsBMC Bioinformatics. 11
Selengut JD, Rusch DB, Haft DH.  2010.  Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function.. BMC Bioinformatics. 11:52.
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B et al..  2002.  Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. NatureNature. 419
Mantri CK, Mohapatra SS, Ramamurthy T, Ghosh R, Colwell RR, Singh DV.  2006.  Septaplex PCR assay for rapid identification of Vibrio cholerae including detection of virulence and int SXT genes. FEMS Microbiology LettersFEMS Microbiology Letters. 265
Nagarajan N, Read TD, Pop M..  2008.  Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 24
Mokryn O, Wagner A, Blattner M, Ruppin E, Shavitt Y.  2016.  The Role of Temporal Trends in Growing Networks.. PLoS One. 11(8):e0156505.

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