Publications

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Journal Articles
Selengut JD, Haft DH.  2010.  Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria.. J Bacteriol. 192(21):5788-98.
Langmead B, Trapnell C, Pop M., Salzberg SL.  2009.  Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome BiologyGenome Biology. 10
Mount SM, Pettersson I, Hinterberger M, Karmas A, Steitz JA.  1983.  The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro.. Cell. 33(2):509-18.
Sethupathy P, Hannenhalli S.  2008.  A Tutorial of the Poisson Random Field Model in Population Genetics. Advances in BioinformaticsAdvances in Bioinformatics. 2008
Bartholomeu DC, Silva RA, Galvão LMC, El‐Sayed NM, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression. Experimental ParasitologyExperimental Parasitology. 102
Bartholomeu DC, Silva RA, Galvão LMC, el-Sayed NMA, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression.. Exp Parasitol. 102(3-4):123-33.
Westenberger SJ, Cerqueira GC, El-Sayed NM, Zingales B, Campbell DA, Sturm NR.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region.. BMC Genomics. 7:60.
Westenberger S, Cerqueira G, El‐Sayed NM, Zingales B, Campbell D, Sturm N.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC GenomicsBMC Genomics. 7
Tilghman S., Astin H.S, Brinkley W., Chilton M.D, Cummings MP, Ehrenberg R.G, Fox M.F, Glenn K., Green P.J, Hans S. et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol CellMol Biol Cell. 9
Singh L.N, Wang L.S, Hannenhalli S.  2007.  TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic acids researchNucleic Acids Research. 35
Snellman E.A, Colwell RR.  2008.  Transesterification activity of a novel lipase from Acinetobacter venetianus RAG-1. Antonie van LeeuwenhoekAntonie van Leeuwenhoek. 94
Li Y, Shah-Simpson S, Okrah K, A Belew T, Choi J, Caradonna KL, Padmanabhan P, Ndegwa DM, M Temanni R, Bravo HCorrada et al..  2016.  Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection.. PLoS Pathog. 12(4):e1005511.
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, el-Sayed NMA, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non-lethal cold shock.. Environ Microbiol. 7(6):789-97.
Boonyaratanakornkit BB, Simpson AJ, Whitehead TA, Fraser CM, El‐Sayed NM, Clark DS.  2005.  Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non‐lethal cold shock. Environmental MicrobiologyEnvironmental Microbiology. 7
Dingermann T, Sharp S, Appel B, DeFranco D, Mount S, Heiermann R, Pongs O, Söll D.  1981.  Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract.. Nucleic Acids Res. 9(16):3907-18.
Dingermann T, Sharp S, Appel B, DeFranco D, Mount S, Heiermann R, Pongs O, Söll D.  1981.  Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract.. Nucleic Acids Res. 9(16):3907-18.
Tootle TL, Silver SJ, Davies EL, Newman V, Latek RR, Mills IA, Selengut J., Parlikar BEW, Rebay I.  2003.  The transcription factor Eyes absent is a protein tyrosine phosphatase. NatureNature. 426
Tootle TL, Silver SJ, Davies EL, Newman V, Latek RR, Mills IA, Selengut J., Parlikar BEW, Rebay I.  2003.  The transcription factor Eyes absent is a protein tyrosine phosphatase. NatureNature. 426
Alam M, Sultana M, G. Nair B, R. Sack B, Sack DA, Siddique A.K, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72
Alam M, Sultana M, G. Nair B, R. Sack B, Sack DA, Siddique A.K, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72
Alam M, Sultana M, G. Nair B, R. Sack B, Sack DA, Siddique A.K, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72
Alam M, Sultana M, G. Nair B, R. Sack B, Sack DA, Siddique A.K, Ali A, Huq A, Colwell RR.  2006.  Toxigenic Vibrio Cholerae in the Aquatic Environment of Mathbaria, Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 72
Regier J.C, Zwick A., Cummings MP, Kawahara A.Y, Cho S., Weller S., Roe A., Baixeras J., Brown J.W, Parr C. et al..  2009.  Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol BiolBMC Evol Biol. 9
Haft DH, Selengut J., White O.  2003.  The TIGRFAMs database of protein families. Nucleic acids researchNucleic Acids Research. 31
Selengut J., Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, R. Richter A, White O.  2007.  TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic acids researchNucleic Acids Research. 35

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