Publications

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2016
Mendelowitz LM, Schwartz DC, Pop M.  2016.  Maligner: a fast ordered restriction map aligner.. Bioinformatics. 32(7):1016-22.
Ondov BD, Treangen T, Melsted áll, Mallonee AB, Bergman NH, Koren S, Phillippy AM.  2016.  Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. (1Suppl 19)
Ghurye JS, Cepeda-Espinoza V, Pop M.  2016.  Metagenomic Assembly: Overview, Challenges and Applications. Yale J Biol Med. 89(3)
Nguyen N-phuong, Warnow T, Pop M, White B.  2016.  A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity. npj Biofilms and Microbiomes. 2:16004.
Persi E, Wolf YI, Koonin EV.  2016.  Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. Nature Communications. 7:13570.
Wagner J, Paulson JN, Wang X, Bhattacharjee B, Bravo éctorCorrada.  2016.  Privacy-Preserving Microbiome Analysis Using Secure Computation. Bioinformatics. :btw073.
Ghurye J, Pop M, Koren S, Chin C-S.  2016.  Scaffolding of long read assemblies using long range contact information.
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.  2016.  System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84.
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T.  2016.  System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84.
Cunningham CE, Li S, Vizeacoumar FS, Bhanumathy KKalyanasun, Lee JSang, Parameswaran S, Furber L, Abuhussein O, Paul JM, McDonald M et al..  2016.  Therapeutic relevance of the protein phosphatase 2A in cancer. Oncotarget.com.
Cunningham CE, Li S, Vizeacoumar FS, Bhanumathy KKalyanasun, Lee JSang, Parameswaran S, Furber L, Abuhussein O, Paul JM, McDonald M et al..  2016.  Therapeutic relevance of the protein phosphatase 2A in cancer. Oncotarget.com.
Li Y, Shah-Simpson S, Okrah K, A Belew T, Choi J, Caradonna KL, Padmanabhan P, Ndegwa DM, M Temanni R, Bravo HCorrada et al..  2016.  Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection.. PLoS Pathog. 12(4):e1005511.

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