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E

Espeland EM, Lipp EK, Huq A, Colwell RR. 2004. Polylysogeny and prophage induction by secondary infection in Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 6

Eng K.H, Bravo HCorrada, Keles S.. 2009. A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolutionMolecular biology and evolution. 26

D

G. de Magny C, Long W., Brown C.W, Hood R.R, Huq A., Murtugudde R., Colwell RR. 2009. Predicting the distribution of Vibrio spp. in the Chesapeake Bay: a Vibrio cholerae case study. EcoHealthEcoHealth. 6

De Magny GConstantin, Mozumder PK, Grim CJ, Hasan NA, M. Naser N, Alam M, Sack B, Huq A, Colwell RR. 2011. Population Dynamics of Vibrio Cholerae and Cholera in the Bangladesh Sundarbans: Role of Zooplankton Diversity. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol..

Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT. 2006. Procrastination Leads to Efficient Filtration for Local Multiple Alignment. 4175:126-137.

Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT. 2006. Procrastination leads to efficient filtration for local multiple alignment. International Workshop on Algorithms in Bioinformatics.

C

Cummings MP. 1992. Patterns and processes of sequence evolution: plant organelle genomes and copia-like retrotransposons.

Cummings MP. 2004. PHYLIP (Phylogeny Inference Package).

Cummings MP, Welschmeyer N.A. 1998. Pigment composition of putatively achlorophyllous angiosperms. Plant Syst EvolPlant Syst Evol. 210

Cummings MP, Nugent J.M, Olmstead R.G, Palmer J.D. 2003. Phylogenetic analysis reveals five independent transfers of the chloroplast gene ıt rbcL to the mitochondrial genome in angiosperms. Curr GenetCurr Genet. 43

Campos A., Cummings MP, Reyes J.L, Laclette J.P. 1998. Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. Mol Phylogenet EvolMol Phylogenet Evol. 10

B

Brown TS, Jacob CG, Silva JC, Takala-Harrison S, Djimdé A, Dondorp AM, Fukuda M, Noedl H, Nyunt MMyaing, Kyaw MPhone et al.. 2015. Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. Infection, Genetics and Evolution. 30:318-322.

Bernstein LB, Mount SM, Weiner AM. 1983. Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites.. Cell. 32(2):461-72.

Basu MK, Selengut J., Haft DH. 2011. ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. BMC bioinformaticsBMC Bioinformatics. 12

Basu MK, Selengut JD, Haft DH. 2011. ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.

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