Publications

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Wagner J, Paulson JN, Wang X-S, Bhattacharjee B, Bravo HCorrada.  2015.  Privacy-Preserving Microbiome Analysis Using Secure Computation.
Wagner J, Paulson JN, Wang X, Bhattacharjee B, Bravo éctorCorrada.  2016.  Privacy-Preserving Microbiome Analysis Using Secure Computation. Bioinformatics. :btw073.
Myers G., Hannenhalli S, Sankoff D., Istrail S., Pevzner P., Waterman M..  2002.  Proceedings of the sixth annual international conference on Computational biology.
Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT.  2006.  Procrastination leads to efficient filtration for local multiple alignment. International Workshop on Algorithms in Bioinformatics.
Darling AE, Treangen T, Zhang L, Kuiken C, Messeguer X, Perna NT.  2006.  Procrastination Leads to Efficient Filtration for Local Multiple Alignment. 4175:126-137.
Ouhammouch M, Langham GE, Hausner W, Simpson AJ, El‐Sayed NM, E. Geiduschek P.  2005.  Promoter architecture and response to a positive regulator of archaeal transcription. Molecular MicrobiologyMolecular Microbiology. 56
Hannenhalli S, Levy S..  2001.  Promoter prediction in the human genome. BioinformaticsBioinformatics. 17
Basu MK, Selengut J., Haft DH.  2011.  ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. BMC bioinformaticsBMC Bioinformatics. 12
Basu MK, Selengut JD, Haft DH.  2011.  ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.. BMC Bioinformatics. 12:434.
Khan Z., Bloom J.S, Garcia B.A, Singh M., Kruglyak L..  2009.  Protein quantification across hundreds of experimental conditions. Proceedings of the National Academy of Sciences. 106(37):15544-15548.
Khan Z, Bloom JS, Garcia BA, Singh M, Kruglyak L.  2009.  Protein quantification across hundreds of experimental conditions.. Proc Natl Acad Sci U S A. 106(37):15544-8.
Patella F, Schug ZT, Persi E, Neilson LJ, Erami Z, Avanzato D, Maione F, Hernandez-Fernaud JR, Mackay G, Zheng L et al..  2015.  Proteomics-based metabolic modeling reveals that fatty acid oxidation (FAO) controls endothelial cell (EC) permeability.. Mol Cell Proteomics. 14(3):621-34.
Bernstein LB, Mount SM, Weiner AM.  1983.  Pseudogenes for human small nuclear RNA U3 appear to arise by integration of self-primed reverse transcripts of the RNA into new chromosomal sites.. Cell. 32(2):461-72.
Everett L., Vo A., Hannenhalli S.  2009.  PTM-Switchboard—a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic acids researchNucleic Acids Research. 37
Snellman EA, Sullivan ER, Colwell RR.  2002.  Purification and properties of the extracellular lipase, LipA, of Acinetobacter sp. RAG‐1. European Journal of BiochemistryEuropean Journal of Biochemistry. 269

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