Publications
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2012. Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS onePLoS One. 7
2014. CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation. Nucleic Acids ResNucleic Acids ResNucleic Acids Res. 42:774-89.
2009. CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome BiologyGenome Biology. 10
2005. Critical Factors Influencing the Occurrence of Vibrio Cholerae in the Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71
2005. Critical Factors Influencing the Occurrence of Vibrio Cholerae in the Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71
2005. Critical Factors Influencing the Occurrence of Vibrio Cholerae in the Environment of Bangladesh. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 71
2011. A cost-aggregating integer linear program for motif finding. Journal of Discrete AlgorithmsJournal of Discrete Algorithms. 9
2010. Correlated Changes Between Regulatory Cis Elements and Condition-Specific Expression in Paralogous Gene Families. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 38
2010. Conversion of viable but nonculturable Vibrio cholerae to the culturable state by co‐culture with eukaryotic cells. Microbiology and ImmunologyMicrobiology and Immunology. 54
2013. Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding. BMC Genomics. 14(1):428.
2013. Contribution of nucleosome binding preferences and co-occurring DNA sequences to transcription factor binding. BMC Genomics. 14(1):428.
2007. A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.. BMC Bioinformatics. 8:159.
2014. A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration.. Mol Syst Biol. 10:744.
2011. A computational statistics approach for estimating the spatial range of morphogen gradients.. Development. 138(22):4867-74.
2011. A computational statistics approach for estimating the spatial range of morphogen gradients.. Development. 138(22):4867-74.
2011. A computational statistics approach for estimating the spatial range of morphogen gradients. Development. 138(22):4867-4874.
2011. A computational statistics approach for estimating the spatial range of morphogen gradients. Development. 138(22):4867-4874.
2008. Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3
2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 100
2003. The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 100
2003. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environmental MicrobiologyEnvironmental Microbiology. 5
2011. Complete Columbian mammoth mitogenome suggests interbreeding with woolly mammoths. Genome biology. 12:R51.