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2003

Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al.. 2003. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.. Nucleic Acids Res. 31(19):5654-66.

Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR. 2003. Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5

Louis VR, Russek-Cohen E, Choopun N, Rivera ING, Gangle B, Jiang SC, Rubin A, Patz JA, Huq A, Colwell RR. 2003. Predictability of Vibrio Cholerae in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 69

Colwell RR, Huq A, M. Islam S, Aziz K.MA, Yunus M., N. Khan H, Mahmud A., R. Sack B, Nair G.B, Chakraborty J. et al.. 2003. Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100

El‐Sayed NM, Ghedin E., Song J., MacLeod A., Bringaud F., Larkin C., Wanless D., Peterson J., Hou L., Taylor S. et al.. 2003. The sequence and analysis of Trypanosoma brucei chromosome II. Nucleic acids researchNucleic Acids Research. 31

el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al.. 2003. The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.

el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al.. 2003. The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.

el-Sayed NMA, Ghedin E, Song J, MacLeod A, Bringaud F, Larkin C, Wanless D, Peterson J, Hou L, Taylor S et al.. 2003. The sequence and analysis of Trypanosoma brucei chromosome II.. Nucleic Acids Res. 31(16):4856-63.

Haft DH, Selengut J., White O. 2003. The TIGRFAMs database of protein families. Nucleic acids researchNucleic Acids Research. 31

Hannenhalli S, Levy S. 2003. Transcriptional regulation of protein complexes and biological pathways. Mammalian GenomeMammalian Genome. 14

2004

Hashmi N., Lee S., Cummings MP. 2004. Abstracting workflows: unifying bioinformatics task conceptualization and specification through Semantic Web services. W3C Workshop on Semantic Web for Life Sciences.

Cummings MP. 2004. BAMBE, DnaSP, ENCprime/SeqCount, LAMARC, MacClade, MEGA, Modeltest, MrBayes, PAML, PAUP*, PHYLIP, r8s, readseq, Seq-Gen, Sites, TreeView. Dictionary of Bioinformatics. :39-40,123-124,146,288-289,305,318,337,352,388,392,398-399,455,457,502,522,568.

Ishimori N., Walsh K., Zheng X., Lu F., Hannenhalli S, Nusskern D., Mural R., Paigen B.. 2004. CHARACTERIZATION OF< i> Ath17, A QUANTITATIVE TRAIT LOCUS FOR ATHEROSCLEROSIS SUSCEPTIBILITY BETWEEN C57BL/6J AND 129S1/SvImJ; SINGLE-NUCLEOTIDE POLYMORPHISMS HAVE IMPORTANT IMPLICATIONS ON IDENTIFYING ATHEROSCLEROSIS MODIFIER GENES. Cardiovascular PathologyCardiovascular Pathology. 13

Seshadri R, Myers GSA, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE, Haft DH et al.. 2004. Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101

Seshadri R, Myers GSA, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE, Haft DH et al.. 2004. Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101

Seshadri R, Myers GSA, Tettelin H, Eisen JA, Heidelberg JF, Dodson RJ, Davidsen TM, DeBoy RT, Fouts DE, Haft DH et al.. 2004. Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 101

Welch DBMark, Cummings MP, Hillis DM, Meselson M. 2004. Divergent Gene Copies in the Asexual Class Bdelloidea (Rotifera) Separated Before the Bdelloid Radiation or Within Bdelloid Families. Proceedings of the National Academy of Sciences of the United States of AmericaPNASProceedings of the National Academy of Sciences of the United States of AmericaPNAS. 101

Ghedin E, Bringaud F, Peterson J, Myler P, Berriman M, Ivens A, Andersson B, Bontempi E, Eisen J, Angiuoli S et al.. 2004. Gene synteny and evolution of genome architecture in trypanosomatids.. Mol Biochem Parasitol. 134(2):183-91.

Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al.. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432

Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al.. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432

Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al.. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

Heidelberg JF, Seshadri R, Haveman SA, Hemme CL, Paulsen IT, Kolonay JF, Eisen JA, Ward N, Methe B, Brinkac LM et al.. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nature biotechnologyNature biotechnology. 22

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