Publications
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2014. Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms.. Nat Biotechnol. 32(5):462-4.
2013. De novo likelihood-based measures for comparing metagenomic assemblies. 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
2013. A decision-theory approach to interpretable set analysis for high-dimensional data. BiometricsBiometrics. 69
2013. Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinformatics (Oxford, England)Bioinformatics (Oxford, England). 29
2013. Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 110
2013. Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 110
2013. Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 110
2013. Genome sequencing of four strains of Rickettsia prowazekii, the causative agent of epidemic typhus, including one flying squirrel isolate. Genome announcementsGenome announcements. 1
2013. Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings in bioinformaticsBriefings in bioinformatics. 14
2013. Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings in bioinformaticsBriefings in bioinformatics. 14
2013. Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings in bioinformaticsBriefings in bioinformatics. 14
2013. K-mulus: Strategies for BLAST in the cloud. 10th International Conference on Parallel Processing and Applied Mathematics (PPAM).
2013. A large-scale, higher-level, molecular phylogenetic study of the insect order Lepidoptera (moths and butterflies). PLoS OnePLoS One. 8
2013. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome BiolGenome Biol. 14
2013. MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome BiolGenome Biol. 14
2013. Primate transcript and protein expression levels evolve under compensatory selection pressures.. Science. 342(6162):1100-4.
2013. Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures. Science. 342(6162):1100-1104.
2013. Quantitative PCR for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate-to-Severe Diarrhea in Low-Income Countries. Journal of Clinical MicrobiologyJournal of Clinical Microbiology. 51
2013. Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection. Journal of Clinical MicrobiologyJournal of Clinical Microbiology. 51
2013. Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection. Journal of Clinical MicrobiologyJournal of Clinical Microbiology. 51