Publications

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Colwell RR.  2004.  A Tangled Bank: Reflections on the Tree of Life and Human Health. Assembling the Tree of LifeAssembling the Tree of Life.
Colwell RR.  2002.  Fulfilling the promise of marine biotechnology. Marine biotechnology in the twenty-first century: problems, promise, and productsMarine biotechnology in the twenty-first century: problems, promise, and products.
Colwell RR, Chun J..  2009.  The Genus Vibrio and Related Genera. Practical handbook of microbiologyPractical handbook of microbiology.
Colwell RR, Huq A, M. Islam S, Aziz K.MA, Yunus M., N. Khan H, Mahmud A., R. Sack B, Nair G.B, Chakraborty J. et al..  2003.  Reduction of Cholera in Bangladeshi Villages by Simple Filtration. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 100
Colwell RR.  2003.  From terabytes to insights. Communications of the ACMCommunications of the ACM. 46
Clegg M.T, Cummings MP, Durbin M.L.  1997.  The evolution of plant nuclear genes. Proc Natl Acad Sci USAProc Natl Acad Sci USA. 94
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450
Chung M, Krueger J, Pop M.  2015.  Robust Parameter Estimation for Biological Systems: A Study on the Dynamics of Microbial Communities. arXiv preprint arXiv:1509.06926.
Chun J., Rivera I.NG, Colwell RR.  2002.  Analysis of 16S-23S rRNA intergenic spacer of Vibrio cholerae and Vibrio mimicus for detection of these species. METHODS IN MOLECULAR BIOLOGYMETHODS IN MOLECULAR BIOLOGY. 179
Chun J., Grim C.J, Hasan N.A, Lee J.H, Choi S.Y, Haley B.J, Taviani E., Jeon Y.S, Kim D.W, Lee J.H et al..  2009.  Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 106
G. Christopher V, Lucia P, Jennifer H.KChoi, Mathieu W, Devan J, J. Pepe H, Jennifer B, Karuna M, J. Alan P, Hannenhalli S et al..  2012.  Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus. Physiological GenomicsPhysiological Genomics.
Choopun N, Louis V, Huq A, Colwell RR.  2002.  Simple Procedure for Rapid Identification of Vibrio Cholerae from the Aquatic Environment. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 68
Chokesajjawatee N, Zo Y-G, Colwell RR.  2008.  Determination of Clonality and Relatedness of Vibrio Cholerae Isolates by Genomic Fingerprinting, Using Long-Range Repetitive Element Sequence-Based PCR. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74
Choi S.S, Hannenhalli S.  2013.  Three independent determinants of protein evolutionary rate. J Mol EvolJ Mol EvolJ Mol Evol. 76:98-111.
Choi J, El-Sayed NM.  2012.  Functional genomics of trypanosomatids.. Parasite Immunol. 34(2-3):72-9.
Choi J.H, Tang H., Kim S., Pop M..  2010.  Computational Approaches for Genome Assembly Validation. Biological Data MiningBiological Data Mining.
Cho S, Zwick A, Regier JC, Mitter C, Cummings MP, Yao J, Du Z, Zhao H, Kawahara AY, Weller S et al..  2011.  Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? Systematic BiologySyst BiolSystematic BiologySyst Biol. 60
Chen PE, Cook C, Stewart AC, Nagarajan N, Sommer DD, Pop M., Thomason B, Thomason MPK, Lentz S, Nolan N et al..  2010.  Genomic characterization of the Yersinia genus. Genome BiologyGenome Biology. 11
Chelaru F, Bravo éctorCorrada.  2015.  Epiviz: a view inside the design of an integrated visual analysis software for genomics. BMC Bioinformatics. 16(Suppl 11):S4.
Chelaru F, Smith L, Goldstein N, Bravo HCorrada.  2014.  Epiviz: interactive visual analytics for functional genomics data.. Nat Methods. 11(9):938-40.
Chazelle B., Kingsford C, Singh M..  2004.  A semidefinite programming approach to side chain positioning with new rounding strategies. INFORMS Journal on ComputingINFORMS Journal on Computing. 16
Chandrasekharan N., Hannenhalli S.  1992.  Efficient algorithms for computing matching and chromatic polynomials on series-parallel graphs. Fourth International Conference on Computing and Information, 1992. Proceedings. ICCI '92.
Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR.  2007.  Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 9
Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado CRenato, El‐Sayed NM, Teixeira SMR.  2008.  Sequence diversity and evolution of multigene families in Trypanosoma cruzi. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 157

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