Publications
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2006. A compact mathematical programming formulation for DNA motif finding. Combinatorial Pattern Matching.
2010. Assembly complexity of prokaryotic genomes using short reads. BMC bioinformaticsBMC Bioinformatics. 11
2009. A synthesis for exactly 3-edge-connected graphs. Arxiv preprint arXiv:0905.1053Arxiv preprint arXiv:0905.1053.
2011. A cost-aggregating integer linear program for motif finding. Journal of Discrete AlgorithmsJournal of Discrete Algorithms. 9
2007. A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes. Molecular biology and evolutionMolecular biology and evolution. 24
2009. 2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 4
1997. Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol EvolMol Biol Evol. 14
2011. Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME JournalThe ISME journal. 6
2005. Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres.. Gene. 346:153-61.
2013. Derepression of Cancer/testis antigens in cancer is associated with distinct patterns of DNA hypomethylation. BMC CancerBMC CancerBMC Cancer. 13:144.
2000. Carbonic anhydrase III: the phosphatase activity is extrinsic. Archives of biochemistry and biophysicsArchives of biochemistry and biophysics. 377
2009. Salient Frame Detection for Molecular Dynamics Simulations. Scientific VisualizationScientific Visualization.
2007. New records of phytoplankton for Bangladesh. 4. Chlorococcales. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 14
2009. New records of phytoplankton for Bangladesh. 9. Some rare and a new species. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 16
2007. New records of phytoplankton for Bangladesh. 3. Volvocales. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 14
2008. New records of phytoplankton for Bangladesh. 8. Trachelomonas Ehr. (Euglenophyceae). Bangladesh Journal of BotanyBangladesh Journal of Botany. 37
2008. New records of phytoplankton for Bangladesh. 2. Cryptophyceae and Synurophyceae. Bangladesh Journal of BotanyBangladesh Journal of Botany. 36
2008. New records of phytoplankton for Bangladesh. 7. Phacus spp. Bangladesh Journal of BotanyBangladesh Journal of Botany. 37
2008. New records of phytoplankton for Bangladesh. 5. Euglena, Euglenocapsa. Bangladesh Journal of Plant TaxonomyBangladesh Journal of Plant Taxonomy. 15
2011. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122.
2004. A Rao-Blackwellized particle filter for eigentracking. Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004.Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..
2009. A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. Bioinformatics. 25(13):1609-1616.
2014. Quantitative 4D analyses of epithelial folding during Drosophila gastrulation.. Development. 141(14):2895-900.
2005. MCMC-based particle filtering for tracking a variable number of interacting targets.. IEEE Trans Pattern Anal Mach Intell. 27(11):1805-19.