Publications
2009. Predicting the distribution of Vibrio spp. in the Chesapeake Bay: a Vibrio cholerae case study. EcoHealthEcoHealth. 6
2008. Environmental signatures associated with cholera epidemics. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 105
2011. Role of Zooplankton Diversity in Vibrio Cholerae Population Dynamics and in the Incidence of Cholera in the Bangladesh Sundarbans. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 77
2011. Population Dynamics of Vibrio Cholerae and Cholera in the Bangladesh Sundarbans: Role of Zooplankton Diversity. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol..
2016. Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.. PLoS One. 11(9):e0160574.
2015. Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6:8555.
2014. Developmental expression of chicken FOXN1 and putative target genes during feather development.. Int J Dev Biol. 58(1):57-64.
2007. Analyzing patterns of microbial evolution using the mauve genome alignment system. Comparative Genomics. :135–152.
2006. Procrastination leads to efficient filtration for local multiple alignment. International Workshop on Algorithms in Bioinformatics.
1997. Hardness of flip-cut problems from optical mapping. Journal of Computational BiologyJournal of Computational Biology. 4
2003. Comparing bootstrap and posterior probability values in the four-taxon case. Syst BiolSyst Biol. 52
2005. Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology (Jena)Zoology (Jena). 108
2004. Applying permutation tests to tree-based statistical models: extending the R package rpart. 2004-24
2004. Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA. BMC BioinformaticsBMC Bioinformatics. 5
1994. Transmission patterns of eukaryotic transposable elements - arguments for and against horizontal transfer. Trends Ecol EvolTrends Ecol Evol. 9
1998. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (ıt Hordeum vulgare ssp. ıt spontaneum): an evaluation of the background selection hypothesis. Proc Natl Acad Sci USAProc Natl Acad Sci USA. 95
2010. Broader incorporation of bioinformatics in education: opportunities and challenges. Brief BioinformBrief Bioinform. 11
2004. Few amino acid positions in ıt rpoB are associated with most of the rifampin resistance in ıt Mycobacterium tuberculosis. BMC BioinformaticsBMC Bioinformatics. 5
1992. Copia-like retrotransposons in plants: a brief introduction. The Plant Genetics NewsletterThe Plant Genetics Newsletter. 8
1998. Pigment composition of putatively achlorophyllous angiosperms. Plant Syst EvolPlant Syst Evol. 210
2004. BAMBE, DnaSP, ENCprime/SeqCount, LAMARC, MacClade, MEGA, Modeltest, MrBayes, PAML, PAUP*, PHYLIP, r8s, readseq, Seq-Gen, Sites, TreeView. Dictionary of Bioinformatics. :39-40,123-124,146,288-289,305,318,337,352,388,392,398-399,455,457,502,522,568.