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Lindsay B., Oundo J., Hossain M.A, Antonio M., Tamboura B., Walker A.W, Paulson J.N, Parkhill J., Omore R., Faruque A.S et al..  2015.  Microbiota that affect risk for shigellosis in children in low-income countries. Emerg Infect DisEmerg Infect Dis. 21:242-50.
Bowler C, Karl DM, Colwell RR.  2009.  Microbial oceanography in a sea of opportunity. NatureNature. 459
Colwell RR.  2006.  Microbial diversity in the era of genomics. SYMPOSIA-SOCIETY FOR GENERAL MICROBIOLOGY. 66
Waisberg M, Lobo F, Cerqueira G, Passos L, Carvalho O, Franco G, El‐Sayed NM.  2007.  Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni. BMC GenomicsBMC Genomics. 8
Treangen T, Messeguer X.  2006.  M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. BMC bioinformatics. 7:433.
Dorri F, Mendelowitz L, Bravo éctorCorrada.  2016.  methylFlow: cell-specific methylation pattern reconstruction from high-throughput bisulfite-converted DNA sequencing. Bioinformatics. 32(11):1618-1624.
Darling AE, Treangen T, Messeguer X, Perna NT.  2007.  Methods in Molecular BiologyComparative GenomicsAnalyzing Patterns of Microbial Evolution Using the Mauve Genome Alignment System. 396:135-152.
Rivera ING, Lipp EK, Gil A, Choopun N, Huq A, Colwell RR.  2003.  Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environmental MicrobiologyEnvironmental Microbiology. 5
Wang J., Ungar L.H, Tseng H., Hannenhalli S.  2007.  MetaProm: a neural network based meta-predictor for alternative human promoter prediction. BMC genomicsBMC Genomics. 8
Liu B, Gibbons T., Ghodsi M., Pop M..  2010.  MetaPhyler: Taxonomic profiling for metagenomic sequences. 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).
Liu B, Pop M..  2011.  MetaPath: identifying differentially abundant metabolic pathways in metagenomic datasets. BMC ProceedingsBMC Proceedings. 5
Treangen T, Koren S., Sommer D.D, Liu B., Astrovskaya I, Ondov B., Darling A.E, Phillippy A.M, Pop M..  2013.  MetAMOS: a modular and open source metagenomic assembly and analysis pipeline. Genome BiolGenome Biol. 14
Ghurye JS, Cepeda-Espinoza V, Pop M.  2016.  Metagenomic Assembly: Overview, Challenges and Applications. Yale J Biol Med. 89(3)
Gill SR, Pop M., DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE.  2006.  Metagenomic Analysis of the Human Distal Gut Microbiome. ScienceScienceScienceScience. 312
Hasan NA, W. Chowdhury B, Rahim N, Sultana M, S. Shabnam A, Mai V, Ali A, Morris GJ, R. Sack B, Huq A et al..  2011.  Metagenomic 16S rDNA Targeted PCR-DGGE in Determining Bacterial Diversity in Aquatic Ecosystem. Bangladesh Journal of MicrobiologyBangladesh Journal of Microbiology. 27
Shaked I, Oberhardt  A., Atias N, Sharan R, Ruppin E.  2016.  Metabolic Network Prediction of Drug Side Effects. Cell Systems. 2(3):209-213.
Bringaud F, Müller M, Cerqueira GCoutinho, Smith M, Rochette A, el-Sayed NMA, Papadopoulou B, Ghedin E.  2007.  Members of a large retroposon family are determinants of post-transcriptional gene expression in Leishmania.. PLoS Pathog. 3(9):1291-307.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays.. BMC Genomics. 10:221.
Bloom JS, Khan Z, Kruglyak L, Singh M, Caudy AA.  2009.  Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays. BMC Genomics. 10(1):221.
Selengut J..  2001.  MDP-1 is a new and distinct member of the haloacid dehalogenase family of aspartate-dependent phosphohydrolases. BiochemistryBiochemistry. 40
Selengut J., Levine R.L.  2000.  MDP-1: A novel eukaryotic magnesium-dependent phosphatase. BiochemistryBiochemistry. 39
Patro R., Ip CYiu, Bista S., Cho S.S, Thirumalai D., Varshney A.  2011.  MDMap: A system for data-driven layout and exploration of molecular dynamics simulations. Biological Data Visualization (BioVis), 2011 IEEE Symposium on.
Khan Z, Balch T, Dellaert F.  2005.  MCMC-based particle filtering for tracking a variable number of interacting targets.. IEEE Trans Pattern Anal Mach Intell. 27(11):1805-19.
Khan Z, Balch T, Dellaert F.  2005.  MCMC-Based Particle Filtering for Tracking a Variable Number of Interacting Targets. IEEE Transactions on Pattern Analysis and Machine Intelligence. 27(11):1805-1918.
Khan Z, Balch T, Dellaert F.  2006.  MCMC Data Association and Sparse Factorization Updating for Real Time Multitarget Tracking with Merged and Multiple Measurements. IEEE Transactions on Pattern Analysis and Machine Intelligence. 28(12):1960-1972.

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