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B
Battle A., Khan Z., Wang S.H, Mitrano A., Ford M.J, Pritchard J.K, Gilad Y..  2015.  Impact of regulatory variation from RNA to protein. Science. 347(6222):664-667.
Bennett J., Dretler S.P, Selengut J., Orme-Johnson W.H.  1994.  Identification of the calcium-binding protein calgranulin in the matrix of struvite stones. Journal of endourology / Endourological SocietyJournal of endourology / Endourological Society. 8
Bringaud F, García-Pérez JLuis, Heras SR, Ghedin E, El-Sayed NM, Andersson B, Baltz T, Lopez MC.  2002.  Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi.. Mol Biochem Parasitol. 124(1-2):73-8.
Bringaud F., Biteau N., Zuiderwijk E., Berriman M., El‐Sayed NM, Ghedin E., Melville S.E, Hall N., Baltz T..  2004.  The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei. Molecular biology and evolutionMolecular biology and evolution. 21
Bringaud F, García-Pérez JLuis, Heras SR, Ghedin E, El‐Sayed NM, Andersson B, Baltz T, Lopez MC.  2002.  Identification of non-autonomous non-LTR retrotransposons in the genome of Trypanosoma cruzi. Molecular and Biochemical ParasitologyMolecular and Biochemical Parasitology. 124
Bringaud F, Biteau N, Zuiderwijk E, Berriman M, El-Sayed NM, Ghedin E, Melville SE, Hall N, Baltz T.  2004.  The ingi and RIME non-LTR retrotransposons are not randomly distributed in the genome of Trypanosoma brucei.. Mol Biol Evol. 21(3):520-8.
C
Colwell RR.  2004.  Infectious disease and environment: cholera as a paradigm for waterborne disease. International MicrobiologyInternational Microbiology. 7
D
Del Canto F., Botkin D.J, Valenzuela P., Popov V., Ruiz-Perez F., Nataro J.P, Levine M.M, Stine O.C, Pop M., Torres A.G et al..  2012.  Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli. Infection and immunityInfection and immunity. 80
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Ghodsi M., Pop M..  2009.  Inexact Local Alignment Search over Suffix Arrays. IEEE International Conference on Bioinformatics and Biomedicine, 2009. BIBM '09.
Goodheart J, Ellingson RA, Vital XG, Filho HC ão, McCarthy JB, Medrano SM, Bhave VJ, a-Méndez Kí, nez LM é, pez Gó et al..  2016.  Identification guide to the heterobranch sea slugs (Mollusca: Gastropoda) from Bocas del Toro, Panama. Marine Biodiversity Records. 96737453830254034557880541418411912544728739317415779780725696418782226404216145163412560451520488424050829677(12343–4)
H
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD et al..  2003.  Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.. Nucleic Acids Res. 31(19):5654-66.
Hannenhalli S.  2006.  Invited Talk: Deciphering Gene Regulatory Networks by in silico approaches. 6th International Workshop on Data Mining in Bioinformatics (BIOKDD06)6th International Workshop on Data Mining in Bioinformatics (BIOKDD06).
Hannenhalli S, Middleton R.P, Levy S., Perroud B., Holzwarth J.A, McDonald K., Hannah S.S,.  2006.  Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements. Osteoarthritis and cartilage/OARS, Osteoarthritis Research SocietyOsteoarthritis and cartilage/OARS, Osteoarthritis Research Society. 14
Hansen KDaniel, Timp W, Bravo HCorrada, Sabunciyan S, Langmead B, McDonald OG, Wen B, Wu H, Liu Y, Diep D et al..  2011.  Increased methylation variation in epigenetic domains across cancer types. Nature Genetics. 43(8):768-775.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al..  2009.  InterPro: the integrative protein signature database.. Nucleic Acids Res. 37(Database issue):D211-5.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L et al..  2009.  InterPro: the integrative protein signature database. Nucleic acids researchNucleic Acids Research. 37
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database.. Nucleic Acids Res. 40(Database issue):D306-12.
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S et al..  2012.  InterPro in 2011: new developments in the family and domain prediction database. Nucleic acids researchNucleic Acids Research. 40
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Jia Z, Hannenhalli S.  2012.  Inferring Evolution of Gene Duplicates Using Probabilistic Models and Nonparametric Belief Propagation. BMC GenomicsBMC Genomics.
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Kawahara A.Y, Ohshima I., Kawakita A., Regier J.C, Mitter C., Cummings MP, Davis D.R, Wagner D.L, De Prinis J., Lopez-Vaamonde C..  2011.  Increased gene sampling provides stronger support for higher-level groups within gracillariid leaf mining moths and relatives (Lepidoptera: Gracillariidae). BMC Evol BiolBMC Evol Biol. 11:182
Kirschner A.KT, Schauer S., Steinberger B., Wilhartitz I., Grim C.J, Huq A., Colwell RR, Herzig A., Sommer R..  2011.  Interaction of Vibrio cholerae non-O1/non-O139 with Copepods, Cladocerans and Competing Bacteria in the Large Alkaline Lake Neusiedler See, Austria. Microbial ecologyMicrobial ecology. 61
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Levy S, Hannenhalli S.  2002.  Identification of transcription factor binding sites in the human genome sequence. Mammalian GenomeMammalian Genome. 13
Liu B, Pop M..  2010.  Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. Bioinformatics Research and ApplicationsBioinformatics Research and Applications. 6053
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Mahmoudabadi G, Rajagopalan K, Getzenberg RH, Hannenhalli S, Rangarajan G, Kulkarni P.  2013.  Intrinsically disordered proteins and conformational noise: Implications in cancer. Cell CycleCell Cycle. 12
O
Otto S.P, Cummings MP, Wakeley J..  1996.  Inferring phylogenies from DNA sequence data: The effects of sampling. New Uses for New PhylogeniesNew Uses for New Phylogenies.

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